Gene : Seita.7G223500 S. italica v2.2
Defline:  (1 of 2) PTHR31499:SF5 - HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN Genomic Order:  2235
Name:  ? Seita.7G223500 Secondary Identifier:  ? PAC:32704668
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G223500 0.5kb upstream 0.5kb upstream 3402 true scaffold_7: 28946202-28949603 Setaria italica
Seita.7G223500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 28946202-28946701 Setaria italica
Seita.7G223500 0.5kb downstream 0.5kb downstream 3402 true scaffold_7: 28946702-28950103 Setaria italica
Seita.7G223500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 28949604-28950103 Setaria italica
Seita.7G223500 1.0kb upstream 1.0kb upstream 3902 true scaffold_7: 28945702-28949603 Setaria italica
Seita.7G223500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 28945702-28946701 Setaria italica
Seita.7G223500 1.0kb downstream 1.0kb downstream 3902 true scaffold_7: 28946702-28950603 Setaria italica
Seita.7G223500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 28949604-28950603 Setaria italica
Seita.7G223500 2.0kb upstream 2.0kb upstream 4902 true scaffold_7: 28944702-28949603 Setaria italica
Seita.7G223500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 28944702-28946701 Setaria italica
Seita.7G223500 2.0kb downstream 2.0kb downstream 4902 true scaffold_7: 28946702-28951603 Setaria italica
Seita.7G223500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 28949604-28951603 Setaria italica
Seita.7G223500 5.0kb upstream 5.0kb upstream 7902 true scaffold_7: 28941702-28949603 Setaria italica
Seita.7G223500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 28941702-28946701 Setaria italica
Seita.7G223500 5.0kb downstream 5.0kb downstream 7902 true scaffold_7: 28946702-28954603 Setaria italica
Seita.7G223500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 28949604-28954603 Setaria italica
Seita.7G223500 10.0kb upstream 10.0kb upstream 12902 true scaffold_7: 28936702-28949603 Setaria italica
Seita.7G223500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 28936702-28946701 Setaria italica
Seita.7G223500 10.0kb downstream 10.0kb downstream 12902 true scaffold_7: 28946702-28959603 Setaria italica
Seita.7G223500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 28949604-28959603 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187123 5267 Panicoideae View MSA
124581169 5269 Grass View MSA
122042666 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121349639 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.424        
cufflinks 0.272       Low
cufflinks 1.337        
cufflinks 1.291        
cufflinks 0.658        
cufflinks 0.161       Low
cufflinks 0.564        
cufflinks 1.64        
cufflinks 0.525        
cufflinks 0.565        
cufflinks 0.207       Low
cufflinks 2.833       High
cufflinks 0.46        
cufflinks 1.803        
cufflinks 1.816        
cufflinks 0.482        
cufflinks 2.673       High
cufflinks 0.189       Low
cufflinks 2.888       High
cufflinks 2.565       High

0 Strain