Gene : Seita.7G223800 S. italica v2.2
Defline:  (1 of 6) 1.10.3.11 - Ubiquinol oxidase (non-electrogenic) / Ubiquinol oxidase Genomic Order:  2238
Name:  ? Seita.7G223800 Secondary Identifier:  ? PAC:32704337
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4302 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G223800 0.5kb upstream 0.5kb upstream 2427 true scaffold_7: 28957071-28959497 Setaria italica
Seita.7G223800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 28958998-28959497 Setaria italica
Seita.7G223800 0.5kb downstream 0.5kb downstream 2427 true scaffold_7: 28956571-28958997 Setaria italica
Seita.7G223800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 28956571-28957070 Setaria italica
Seita.7G223800 1.0kb upstream 1.0kb upstream 2927 true scaffold_7: 28957071-28959997 Setaria italica
Seita.7G223800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 28958998-28959997 Setaria italica
Seita.7G223800 1.0kb downstream 1.0kb downstream 2927 true scaffold_7: 28956071-28958997 Setaria italica
Seita.7G223800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 28956071-28957070 Setaria italica
Seita.7G223800 2.0kb upstream 2.0kb upstream 3927 true scaffold_7: 28957071-28960997 Setaria italica
Seita.7G223800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 28958998-28960997 Setaria italica
Seita.7G223800 2.0kb downstream 2.0kb downstream 3927 true scaffold_7: 28955071-28958997 Setaria italica
Seita.7G223800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 28955071-28957070 Setaria italica
Seita.7G223800 5.0kb upstream 5.0kb upstream 6927 true scaffold_7: 28957071-28963997 Setaria italica
Seita.7G223800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 28958998-28963997 Setaria italica
Seita.7G223800 5.0kb downstream 5.0kb downstream 6927 true scaffold_7: 28952071-28958997 Setaria italica
Seita.7G223800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 28952071-28957070 Setaria italica
Seita.7G223800 10.0kb upstream 10.0kb upstream 11927 true scaffold_7: 28957071-28968997 Setaria italica
Seita.7G223800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 28958998-28968997 Setaria italica
Seita.7G223800 10.0kb downstream 10.0kb downstream 11927 true scaffold_7: 28947071-28958997 Setaria italica
Seita.7G223800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 28947071-28957070 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185203 5267 Panicoideae View MSA
124585817 5269 Grass View MSA
122048992 5273 Angiosperm View MSA
121347153 5274 Embryophyte View MSA
123426662 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.029     Low  
cufflinks 0.006     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low Low
cufflinks 3.95       High
cufflinks 0.691        
cufflinks 2.071       High
cufflinks 0.156     Low  
cufflinks 0.249        
cufflinks 4.95       High
cufflinks 0.02     Low  
cufflinks 1.84        
cufflinks 0.506        
cufflinks 0.113        
cufflinks 1.0        

0 Strain