Gene : Seita.7G223900 S. italica v2.2
Defline:  (1 of 6) 1.10.3.11 - Ubiquinol oxidase (non-electrogenic) / Ubiquinol oxidase Genomic Order:  2239
Name:  ? Seita.7G223900 Secondary Identifier:  ? PAC:32703860
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4302 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G223900 0.5kb upstream 0.5kb upstream 3646 true scaffold_7: 28960609-28964254 Setaria italica
Seita.7G223900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 28963755-28964254 Setaria italica
Seita.7G223900 0.5kb downstream 0.5kb downstream 3646 true scaffold_7: 28960109-28963754 Setaria italica
Seita.7G223900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 28960109-28960608 Setaria italica
Seita.7G223900 1.0kb upstream 1.0kb upstream 4146 true scaffold_7: 28960609-28964754 Setaria italica
Seita.7G223900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 28963755-28964754 Setaria italica
Seita.7G223900 1.0kb downstream 1.0kb downstream 4146 true scaffold_7: 28959609-28963754 Setaria italica
Seita.7G223900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 28959609-28960608 Setaria italica
Seita.7G223900 2.0kb upstream 2.0kb upstream 5146 true scaffold_7: 28960609-28965754 Setaria italica
Seita.7G223900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 28963755-28965754 Setaria italica
Seita.7G223900 2.0kb downstream 2.0kb downstream 5146 true scaffold_7: 28958609-28963754 Setaria italica
Seita.7G223900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 28958609-28960608 Setaria italica
Seita.7G223900 5.0kb upstream 5.0kb upstream 8146 true scaffold_7: 28960609-28968754 Setaria italica
Seita.7G223900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 28963755-28968754 Setaria italica
Seita.7G223900 5.0kb downstream 5.0kb downstream 8146 true scaffold_7: 28955609-28963754 Setaria italica
Seita.7G223900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 28955609-28960608 Setaria italica
Seita.7G223900 10.0kb upstream 10.0kb upstream 13146 true scaffold_7: 28960609-28973754 Setaria italica
Seita.7G223900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 28963755-28973754 Setaria italica
Seita.7G223900 10.0kb downstream 10.0kb downstream 13146 true scaffold_7: 28950609-28963754 Setaria italica
Seita.7G223900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 28950609-28960608 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180086 5267 Panicoideae View MSA
124585817 5269 Grass View MSA
122048992 5273 Angiosperm View MSA
121347153 5274 Embryophyte View MSA
123426662 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.852        
cufflinks 0.313        
cufflinks 0.199        
cufflinks 0.097       Low
cufflinks 0.188        
cufflinks 0.324        
cufflinks 0.256        
cufflinks 0.138       Low
cufflinks 0.239        
cufflinks 6.88       High
cufflinks 1.866       High
cufflinks 2.353       High
cufflinks 0.362        
cufflinks 0.915        
cufflinks 1.183        
cufflinks 0.215        
cufflinks 0.766        
cufflinks 0.786        
cufflinks 1.018        
cufflinks 0.708        

0 Strain