Gene : Seita.7G305200 S. italica v2.2
Defline:  (1 of 4) 2.2.1.6 - Acetolactate synthase / Alpha-acetolactate synthetase Genomic Order:  3052
Name:  ? Seita.7G305200 Secondary Identifier:  ? PAC:32704698
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica BRANCHED-CHAIN-AA-SYN-PWY Setaria italica pathologic  
Sitalica ILEUSYN-PWY Setaria italica pathologic  
Sitalica PWY-3001 Setaria italica pathologic  
Sitalica VALSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G305200 0.5kb upstream 0.5kb upstream 1539 true scaffold_7: 34337031-34338569 Setaria italica
Seita.7G305200 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 34338070-34338569 Setaria italica
Seita.7G305200 0.5kb downstream 0.5kb downstream 1539 true scaffold_7: 34336531-34338069 Setaria italica
Seita.7G305200 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 34336531-34337030 Setaria italica
Seita.7G305200 1.0kb upstream 1.0kb upstream 2039 true scaffold_7: 34337031-34339069 Setaria italica
Seita.7G305200 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 34338070-34339069 Setaria italica
Seita.7G305200 1.0kb downstream 1.0kb downstream 2039 true scaffold_7: 34336031-34338069 Setaria italica
Seita.7G305200 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 34336031-34337030 Setaria italica
Seita.7G305200 2.0kb upstream 2.0kb upstream 3039 true scaffold_7: 34337031-34340069 Setaria italica
Seita.7G305200 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 34338070-34340069 Setaria italica
Seita.7G305200 2.0kb downstream 2.0kb downstream 3039 true scaffold_7: 34335031-34338069 Setaria italica
Seita.7G305200 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 34335031-34337030 Setaria italica
Seita.7G305200 5.0kb upstream 5.0kb upstream 6039 true scaffold_7: 34337031-34343069 Setaria italica
Seita.7G305200 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 34338070-34343069 Setaria italica
Seita.7G305200 5.0kb downstream 5.0kb downstream 6039 true scaffold_7: 34332031-34338069 Setaria italica
Seita.7G305200 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 34332031-34337030 Setaria italica
Seita.7G305200 10.0kb upstream 10.0kb upstream 11039 true scaffold_7: 34337031-34348069 Setaria italica
Seita.7G305200 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 34338070-34348069 Setaria italica
Seita.7G305200 10.0kb downstream 10.0kb downstream 11039 true scaffold_7: 34327031-34338069 Setaria italica
Seita.7G305200 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 34327031-34337030 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192751 5267 Panicoideae View MSA
124573113 5269 Grass View MSA
122048705 5273 Angiosperm View MSA
121347737 5274 Embryophyte View MSA
123380610 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.902        
cufflinks 0.278        
cufflinks 0.169       Low
cufflinks 0.203       Low
cufflinks 0.222       Low
cufflinks 0.359        
cufflinks 0.459        
cufflinks 0.186       Low
cufflinks 0.162       Low
cufflinks 5.078       High
cufflinks 0.963        
cufflinks 1.032        
cufflinks 1.314        
cufflinks 2.238       High
cufflinks 1.82       High
cufflinks 0.926        
cufflinks 1.635        
cufflinks 0.425        
cufflinks 1.037        
cufflinks 1.278        

0 Strain