Gene : Seita.7G271800 S. italica v2.2
Defline:  (1 of 3) 3.5.2.3 - Dihydroorotase / DHOase Genomic Order:  2718
Name:  ? Seita.7G271800 Secondary Identifier:  ? PAC:32704388
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-162 Setaria italica pathologic  
Sitalica PWY-5686 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G271800 0.5kb upstream 0.5kb upstream 4596 true scaffold_7: 32299765-32304360 Setaria italica
Seita.7G271800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 32303861-32304360 Setaria italica
Seita.7G271800 0.5kb downstream 0.5kb downstream 4596 true scaffold_7: 32299265-32303860 Setaria italica
Seita.7G271800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 32299265-32299764 Setaria italica
Seita.7G271800 1.0kb upstream 1.0kb upstream 5096 true scaffold_7: 32299765-32304860 Setaria italica
Seita.7G271800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 32303861-32304860 Setaria italica
Seita.7G271800 1.0kb downstream 1.0kb downstream 5096 true scaffold_7: 32298765-32303860 Setaria italica
Seita.7G271800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 32298765-32299764 Setaria italica
Seita.7G271800 2.0kb upstream 2.0kb upstream 6096 true scaffold_7: 32299765-32305860 Setaria italica
Seita.7G271800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 32303861-32305860 Setaria italica
Seita.7G271800 2.0kb downstream 2.0kb downstream 6096 true scaffold_7: 32297765-32303860 Setaria italica
Seita.7G271800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 32297765-32299764 Setaria italica
Seita.7G271800 5.0kb upstream 5.0kb upstream 9096 true scaffold_7: 32299765-32308860 Setaria italica
Seita.7G271800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 32303861-32308860 Setaria italica
Seita.7G271800 5.0kb downstream 5.0kb downstream 9096 true scaffold_7: 32294765-32303860 Setaria italica
Seita.7G271800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 32294765-32299764 Setaria italica
Seita.7G271800 10.0kb upstream 10.0kb upstream 14096 true scaffold_7: 32299765-32313860 Setaria italica
Seita.7G271800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 32303861-32313860 Setaria italica
Seita.7G271800 10.0kb downstream 10.0kb downstream 14096 true scaffold_7: 32289765-32303860 Setaria italica
Seita.7G271800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 32289765-32299764 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041185 5273 Angiosperm View MSA
122192590 5267 Panicoideae View MSA
124590049 5269 Grass View MSA
121347415 5274 Embryophyte View MSA
123424223 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.402        
cufflinks 3.849        
cufflinks 2.751       Low
cufflinks 2.499       Low
cufflinks 2.954       Low
cufflinks 5.732        
cufflinks 5.034        
cufflinks 7.869       High
cufflinks 4.829        
cufflinks 5.09        
cufflinks 5.77        
cufflinks 5.819        
cufflinks 5.049        
cufflinks 3.386        
cufflinks 5.623        
cufflinks 4.252        
cufflinks 7.581       High
cufflinks 3.753        
cufflinks 3.32       Low
cufflinks 6.599       High

0 Strain