Gene : Seita.7G272300 S. italica v2.2
Defline:  (1 of 2) 6.1.1.19 - Arginine--tRNA ligase / Arginyl-tRNA synthetase Genomic Order:  2723
Name:  ? Seita.7G272300 Secondary Identifier:  ? PAC:32705136
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G272300 0.5kb upstream 0.5kb upstream 6980 true scaffold_7: 32327482-32334461 Setaria italica
Seita.7G272300 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 32327482-32327981 Setaria italica
Seita.7G272300 0.5kb downstream 0.5kb downstream 6980 true scaffold_7: 32327982-32334961 Setaria italica
Seita.7G272300 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 32334462-32334961 Setaria italica
Seita.7G272300 1.0kb upstream 1.0kb upstream 7480 true scaffold_7: 32326982-32334461 Setaria italica
Seita.7G272300 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 32326982-32327981 Setaria italica
Seita.7G272300 1.0kb downstream 1.0kb downstream 7480 true scaffold_7: 32327982-32335461 Setaria italica
Seita.7G272300 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 32334462-32335461 Setaria italica
Seita.7G272300 2.0kb upstream 2.0kb upstream 8480 true scaffold_7: 32325982-32334461 Setaria italica
Seita.7G272300 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 32325982-32327981 Setaria italica
Seita.7G272300 2.0kb downstream 2.0kb downstream 8480 true scaffold_7: 32327982-32336461 Setaria italica
Seita.7G272300 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 32334462-32336461 Setaria italica
Seita.7G272300 5.0kb upstream 5.0kb upstream 11480 true scaffold_7: 32322982-32334461 Setaria italica
Seita.7G272300 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 32322982-32327981 Setaria italica
Seita.7G272300 5.0kb downstream 5.0kb downstream 11480 true scaffold_7: 32327982-32339461 Setaria italica
Seita.7G272300 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 32334462-32339461 Setaria italica
Seita.7G272300 10.0kb upstream 10.0kb upstream 16480 true scaffold_7: 32317982-32334461 Setaria italica
Seita.7G272300 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 32317982-32327981 Setaria italica
Seita.7G272300 10.0kb downstream 10.0kb downstream 16480 true scaffold_7: 32327982-32344461 Setaria italica
Seita.7G272300 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 32334462-32344461 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176353 5267 Panicoideae View MSA
124586091 5269 Grass View MSA
122042876 5273 Angiosperm View MSA
121345157 5274 Embryophyte View MSA
123426289 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.33     High High
cufflinks 25.062     High  
cufflinks 20.836     High  
cufflinks 18.788     High Low
cufflinks 21.352     High  
cufflinks 29.02     High  
cufflinks 25.843     High  
cufflinks 29.645     High  
cufflinks 43.457     High High
cufflinks 19.893     High Low
cufflinks 29.051     High  
cufflinks 28.216     High  
cufflinks 25.095     High  
cufflinks 23.171     High  
cufflinks 26.14     High  
cufflinks 25.414     High  
cufflinks 30.247     High  
cufflinks 25.812     High  
cufflinks 15.083     High Low
cufflinks 27.326     High  

0 Strain