Gene : Seita.7G276000 S. italica v2.2
Defline:  (1 of 1) PTHR11097:SF8 - EXOSOME COMPLEX COMPONENT RRP42 Genomic Order:  2760
Name:  ? Seita.7G276000 Secondary Identifier:  ? PAC:32704729
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G276000 0.5kb upstream 0.5kb upstream 5647 true scaffold_7: 32587855-32593501 Setaria italica
Seita.7G276000 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 32593002-32593501 Setaria italica
Seita.7G276000 0.5kb downstream 0.5kb downstream 5647 true scaffold_7: 32587355-32593001 Setaria italica
Seita.7G276000 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 32587355-32587854 Setaria italica
Seita.7G276000 1.0kb upstream 1.0kb upstream 6147 true scaffold_7: 32587855-32594001 Setaria italica
Seita.7G276000 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 32593002-32594001 Setaria italica
Seita.7G276000 1.0kb downstream 1.0kb downstream 6147 true scaffold_7: 32586855-32593001 Setaria italica
Seita.7G276000 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 32586855-32587854 Setaria italica
Seita.7G276000 2.0kb upstream 2.0kb upstream 7147 true scaffold_7: 32587855-32595001 Setaria italica
Seita.7G276000 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 32593002-32595001 Setaria italica
Seita.7G276000 2.0kb downstream 2.0kb downstream 7147 true scaffold_7: 32585855-32593001 Setaria italica
Seita.7G276000 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 32585855-32587854 Setaria italica
Seita.7G276000 5.0kb upstream 5.0kb upstream 10147 true scaffold_7: 32587855-32598001 Setaria italica
Seita.7G276000 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 32593002-32598001 Setaria italica
Seita.7G276000 5.0kb downstream 5.0kb downstream 10147 true scaffold_7: 32582855-32593001 Setaria italica
Seita.7G276000 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 32582855-32587854 Setaria italica
Seita.7G276000 10.0kb upstream 10.0kb upstream 15147 true scaffold_7: 32587855-32603001 Setaria italica
Seita.7G276000 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 32593002-32603001 Setaria italica
Seita.7G276000 10.0kb downstream 10.0kb downstream 15147 true scaffold_7: 32577855-32593001 Setaria italica
Seita.7G276000 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 32577855-32587854 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176142 5267 Panicoideae View MSA
124579244 5269 Grass View MSA
122044791 5273 Angiosperm View MSA
121345379 5274 Embryophyte View MSA
123428075 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.87        
cufflinks 1.58       High
cufflinks 0.33       Low
cufflinks 0.151       Low
cufflinks 0.289       Low
cufflinks 1.605       High
cufflinks 0.846        
cufflinks 1.228        
cufflinks 1.082        
cufflinks 0.98        
cufflinks 1.167        
cufflinks 0.947        
cufflinks 0.676        
cufflinks 0.856        
cufflinks 1.088        
cufflinks 0.659        
cufflinks 1.437        
cufflinks 0.432        
cufflinks 0.198       Low
cufflinks 1.453        

0 Strain