Gene : Seita.8G062900 S. italica v2.2
Defline:  (1 of 1) PTHR13561:SF20 - MUTAGEN-SENSITIVE 101 Genomic Order:  629
Name:  ? Seita.8G062900 Secondary Identifier:  ? PAC:32716832
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G062900 0.5kb upstream 0.5kb upstream 9080 true scaffold_8: 5996181-6005260 Setaria italica
Seita.8G062900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 6004761-6005260 Setaria italica
Seita.8G062900 0.5kb downstream 0.5kb downstream 9080 true scaffold_8: 5995681-6004760 Setaria italica
Seita.8G062900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 5995681-5996180 Setaria italica
Seita.8G062900 1.0kb upstream 1.0kb upstream 9580 true scaffold_8: 5996181-6005760 Setaria italica
Seita.8G062900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 6004761-6005760 Setaria italica
Seita.8G062900 1.0kb downstream 1.0kb downstream 9580 true scaffold_8: 5995181-6004760 Setaria italica
Seita.8G062900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 5995181-5996180 Setaria italica
Seita.8G062900 2.0kb upstream 2.0kb upstream 10580 true scaffold_8: 5996181-6006760 Setaria italica
Seita.8G062900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 6004761-6006760 Setaria italica
Seita.8G062900 2.0kb downstream 2.0kb downstream 10580 true scaffold_8: 5994181-6004760 Setaria italica
Seita.8G062900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 5994181-5996180 Setaria italica
Seita.8G062900 5.0kb upstream 5.0kb upstream 13580 true scaffold_8: 5996181-6009760 Setaria italica
Seita.8G062900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 6004761-6009760 Setaria italica
Seita.8G062900 5.0kb downstream 5.0kb downstream 13580 true scaffold_8: 5991181-6004760 Setaria italica
Seita.8G062900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 5991181-5996180 Setaria italica
Seita.8G062900 10.0kb upstream 10.0kb upstream 18580 true scaffold_8: 5996181-6014760 Setaria italica
Seita.8G062900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 6004761-6014760 Setaria italica
Seita.8G062900 10.0kb downstream 10.0kb downstream 18580 true scaffold_8: 5986181-6004760 Setaria italica
Seita.8G062900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 5986181-5996180 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189466 5267 Panicoideae View MSA
124569134 5269 Grass View MSA
122043112 5273 Angiosperm View MSA
121348037 5274 Embryophyte View MSA
123425629 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.217        
cufflinks 3.494       High
cufflinks 0.64       Low
cufflinks 0.379       Low
cufflinks 0.454       Low
cufflinks 3.15       High
cufflinks 1.519        
cufflinks 1.635        
cufflinks 1.229        
cufflinks 1.157        
cufflinks 2.387        
cufflinks 1.782        
cufflinks 1.384        
cufflinks 1.016        
cufflinks 2.366        
cufflinks 1.553        
cufflinks 2.293        
cufflinks 0.816        
cufflinks 0.332       Low
cufflinks 2.082        

0 Strain