Gene : Seita.8G061100 S. italica v2.2
Defline:  (1 of 2) PTHR11699//PTHR11699:SF175 - ALDEHYDE DEHYDROGENASE-RELATED Genomic Order:  611
Name:  ? Seita.8G061100 Secondary Identifier:  ? PAC:32714989
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-2724 Setaria italica pathologic  
Sitalica PWY66-21 Setaria italica pathologic  
Sitalica PWY66-389 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G061100 0.5kb upstream 0.5kb upstream 4986 true scaffold_8: 5726468-5731453 Setaria italica
Seita.8G061100 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 5726468-5726967 Setaria italica
Seita.8G061100 0.5kb downstream 0.5kb downstream 4986 true scaffold_8: 5726968-5731953 Setaria italica
Seita.8G061100 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 5731454-5731953 Setaria italica
Seita.8G061100 1.0kb upstream 1.0kb upstream 5486 true scaffold_8: 5725968-5731453 Setaria italica
Seita.8G061100 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 5725968-5726967 Setaria italica
Seita.8G061100 1.0kb downstream 1.0kb downstream 5486 true scaffold_8: 5726968-5732453 Setaria italica
Seita.8G061100 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 5731454-5732453 Setaria italica
Seita.8G061100 2.0kb upstream 2.0kb upstream 6486 true scaffold_8: 5724968-5731453 Setaria italica
Seita.8G061100 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 5724968-5726967 Setaria italica
Seita.8G061100 2.0kb downstream 2.0kb downstream 6486 true scaffold_8: 5726968-5733453 Setaria italica
Seita.8G061100 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 5731454-5733453 Setaria italica
Seita.8G061100 5.0kb upstream 5.0kb upstream 9486 true scaffold_8: 5721968-5731453 Setaria italica
Seita.8G061100 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 5721968-5726967 Setaria italica
Seita.8G061100 5.0kb downstream 5.0kb downstream 9486 true scaffold_8: 5726968-5736453 Setaria italica
Seita.8G061100 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 5731454-5736453 Setaria italica
Seita.8G061100 10.0kb upstream 10.0kb upstream 14486 true scaffold_8: 5716968-5731453 Setaria italica
Seita.8G061100 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 5716968-5726967 Setaria italica
Seita.8G061100 10.0kb downstream 10.0kb downstream 14486 true scaffold_8: 5726968-5741453 Setaria italica
Seita.8G061100 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 5731454-5741453 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196530 5267 Panicoideae View MSA
124579064 5269 Grass View MSA
122047593 5273 Angiosperm View MSA
121349887 5274 Embryophyte View MSA
123425420 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.141     High Low
cufflinks 45.767     High  
cufflinks 148.672     High High
cufflinks 146.381     High High
cufflinks 91.914     High  
cufflinks 56.636     High  
cufflinks 25.956     High Low
cufflinks 59.075     High  
cufflinks 51.67     High  
cufflinks 42.49     High  
cufflinks 69.823     High  
cufflinks 67.989     High  
cufflinks 112.453     High High
cufflinks 126.753     High High
cufflinks 69.697     High  
cufflinks 26.553     High Low
cufflinks 51.773     High  
cufflinks 40.486     High  
cufflinks 80.475     High  
cufflinks 38.24     High  

0 Strain