Gene : Seita.8G013200 S. italica v2.2
Defline:  (1 of 2) PTHR30053:SF3 - ELONGATION FACTOR EF-P Genomic Order:  132
Name:  ? Seita.8G013200 Secondary Identifier:  ? PAC:32714889
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G013200 0.5kb upstream 0.5kb upstream 3526 true scaffold_8: 780654-784179 Setaria italica
Seita.8G013200 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 783680-784179 Setaria italica
Seita.8G013200 0.5kb downstream 0.5kb downstream 3526 true scaffold_8: 780154-783679 Setaria italica
Seita.8G013200 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 780154-780653 Setaria italica
Seita.8G013200 1.0kb upstream 1.0kb upstream 4026 true scaffold_8: 780654-784679 Setaria italica
Seita.8G013200 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 783680-784679 Setaria italica
Seita.8G013200 1.0kb downstream 1.0kb downstream 4026 true scaffold_8: 779654-783679 Setaria italica
Seita.8G013200 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 779654-780653 Setaria italica
Seita.8G013200 2.0kb upstream 2.0kb upstream 5026 true scaffold_8: 780654-785679 Setaria italica
Seita.8G013200 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 783680-785679 Setaria italica
Seita.8G013200 2.0kb downstream 2.0kb downstream 5026 true scaffold_8: 778654-783679 Setaria italica
Seita.8G013200 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 778654-780653 Setaria italica
Seita.8G013200 5.0kb upstream 5.0kb upstream 8026 true scaffold_8: 780654-788679 Setaria italica
Seita.8G013200 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 783680-788679 Setaria italica
Seita.8G013200 5.0kb downstream 5.0kb downstream 8026 true scaffold_8: 775654-783679 Setaria italica
Seita.8G013200 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 775654-780653 Setaria italica
Seita.8G013200 10.0kb upstream 10.0kb upstream 13026 true scaffold_8: 780654-793679 Setaria italica
Seita.8G013200 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 783680-793679 Setaria italica
Seita.8G013200 10.0kb downstream 10.0kb downstream 13026 true scaffold_8: 770654-783679 Setaria italica
Seita.8G013200 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 770654-780653 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122054886 5267 Panicoideae Singleton cluster - no MSA
124354690 5269 Grass Singleton cluster - no MSA
122051510 5273 Angiosperm View MSA
121347345 5274 Embryophyte View MSA
123424551 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.757        
cufflinks 1.431        
cufflinks 0.626        
cufflinks 0.252       Low
cufflinks 2.172        
cufflinks 1.434        
cufflinks 3.44       High
cufflinks 6.362       High
cufflinks 7.5       High
cufflinks 2.369        
cufflinks 1.27        
cufflinks 0.167       Low
cufflinks 0.265       Low
cufflinks 1.174        
cufflinks 0.273       Low
cufflinks 2.713        
cufflinks 0.191       Low
cufflinks 1.099        
cufflinks 0.248       Low
cufflinks 0.272       Low

0 Strain