Gene : Seita.8G027200 S. italica v2.2
Defline:  (1 of 2) PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Genomic Order:  272
Name:  ? Seita.8G027200 Secondary Identifier:  ? PAC:32715237
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G027200 0.5kb upstream 0.5kb upstream 3317 true scaffold_8: 1673902-1677218 Setaria italica
Seita.8G027200 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 1676719-1677218 Setaria italica
Seita.8G027200 0.5kb downstream 0.5kb downstream 3317 true scaffold_8: 1673402-1676718 Setaria italica
Seita.8G027200 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 1673402-1673901 Setaria italica
Seita.8G027200 1.0kb upstream 1.0kb upstream 3817 true scaffold_8: 1673902-1677718 Setaria italica
Seita.8G027200 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 1676719-1677718 Setaria italica
Seita.8G027200 1.0kb downstream 1.0kb downstream 3817 true scaffold_8: 1672902-1676718 Setaria italica
Seita.8G027200 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 1672902-1673901 Setaria italica
Seita.8G027200 2.0kb upstream 2.0kb upstream 4817 true scaffold_8: 1673902-1678718 Setaria italica
Seita.8G027200 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 1676719-1678718 Setaria italica
Seita.8G027200 2.0kb downstream 2.0kb downstream 4817 true scaffold_8: 1671902-1676718 Setaria italica
Seita.8G027200 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 1671902-1673901 Setaria italica
Seita.8G027200 5.0kb upstream 5.0kb upstream 7817 true scaffold_8: 1673902-1681718 Setaria italica
Seita.8G027200 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 1676719-1681718 Setaria italica
Seita.8G027200 5.0kb downstream 5.0kb downstream 7817 true scaffold_8: 1668902-1676718 Setaria italica
Seita.8G027200 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 1668902-1673901 Setaria italica
Seita.8G027200 10.0kb upstream 10.0kb upstream 12817 true scaffold_8: 1673902-1686718 Setaria italica
Seita.8G027200 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 1676719-1686718 Setaria italica
Seita.8G027200 10.0kb downstream 10.0kb downstream 12817 true scaffold_8: 1663902-1676718 Setaria italica
Seita.8G027200 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 1663902-1673901 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181058 5267 Panicoideae View MSA
124581114 5269 Grass View MSA
122051300 5273 Angiosperm View MSA
121352511 5274 Embryophyte View MSA
123382830 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.844        
cufflinks 13.538     High High
cufflinks 7.877        
cufflinks 5.848        
cufflinks 6.487        
cufflinks 15.496     High High
cufflinks 7.894        
cufflinks 15.598     High High
cufflinks 9.378        
cufflinks 10.247        
cufflinks 6.211        
cufflinks 4.921        
cufflinks 5.532        
cufflinks 9.228        
cufflinks 5.376        
cufflinks 4.374       Low
cufflinks 6.911        
cufflinks 2.855       Low
cufflinks 4.239       Low
cufflinks 6.203        

0 Strain