Gene : Seita.8G028100 S. italica v2.2
Defline:  (1 of 2) PTHR32019:SF2 - R3H DOMAIN-CONTAINING PROTEIN 4 Genomic Order:  281
Name:  ? Seita.8G028100 Secondary Identifier:  ? PAC:32717460
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G028100 0.5kb upstream 0.5kb upstream 3398 true scaffold_8: 1733557-1736954 Setaria italica
Seita.8G028100 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 1733557-1734056 Setaria italica
Seita.8G028100 0.5kb downstream 0.5kb downstream 3398 true scaffold_8: 1734057-1737454 Setaria italica
Seita.8G028100 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 1736955-1737454 Setaria italica
Seita.8G028100 1.0kb upstream 1.0kb upstream 3898 true scaffold_8: 1733057-1736954 Setaria italica
Seita.8G028100 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 1733057-1734056 Setaria italica
Seita.8G028100 1.0kb downstream 1.0kb downstream 3898 true scaffold_8: 1734057-1737954 Setaria italica
Seita.8G028100 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 1736955-1737954 Setaria italica
Seita.8G028100 2.0kb upstream 2.0kb upstream 4898 true scaffold_8: 1732057-1736954 Setaria italica
Seita.8G028100 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 1732057-1734056 Setaria italica
Seita.8G028100 2.0kb downstream 2.0kb downstream 4898 true scaffold_8: 1734057-1738954 Setaria italica
Seita.8G028100 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 1736955-1738954 Setaria italica
Seita.8G028100 5.0kb upstream 5.0kb upstream 7898 true scaffold_8: 1729057-1736954 Setaria italica
Seita.8G028100 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 1729057-1734056 Setaria italica
Seita.8G028100 5.0kb downstream 5.0kb downstream 7898 true scaffold_8: 1734057-1741954 Setaria italica
Seita.8G028100 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 1736955-1741954 Setaria italica
Seita.8G028100 10.0kb upstream 10.0kb upstream 12898 true scaffold_8: 1724057-1736954 Setaria italica
Seita.8G028100 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 1724057-1734056 Setaria italica
Seita.8G028100 10.0kb downstream 10.0kb downstream 12898 true scaffold_8: 1734057-1746954 Setaria italica
Seita.8G028100 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 1736955-1746954 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179684 5267 Panicoideae View MSA
124574661 5269 Grass View MSA
122042541 5273 Angiosperm View MSA
123428951 5275 Viridiplantae View MSA
121347300 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.092        
cufflinks 13.379     High  
cufflinks 9.335        
cufflinks 10.065        
cufflinks 9.415        
cufflinks 12.237        
cufflinks 9.138       Low
cufflinks 9.571        
cufflinks 7.596       Low
cufflinks 12.347        
cufflinks 12.894        
cufflinks 22.681     High High
cufflinks 13.383        
cufflinks 10.233        
cufflinks 15.688     High High
cufflinks 11.355        
cufflinks 16.871     High High
cufflinks 11.15        
cufflinks 12.357     High  
cufflinks 15.128     High  

0 Strain