Gene : Seita.8G130900 S. italica v2.2
Defline:  (1 of 2) PTHR11223:SF3 - EXPORTIN-5 Genomic Order:  1309
Name:  ? Seita.8G130900 Secondary Identifier:  ? PAC:32716671
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G130900 0.5kb upstream 0.5kb upstream 19985 true scaffold_8: 25246439-25266423 Setaria italica
Seita.8G130900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 25246439-25246938 Setaria italica
Seita.8G130900 0.5kb downstream 0.5kb downstream 19985 true scaffold_8: 25246939-25266923 Setaria italica
Seita.8G130900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 25266424-25266923 Setaria italica
Seita.8G130900 1.0kb upstream 1.0kb upstream 20485 true scaffold_8: 25245939-25266423 Setaria italica
Seita.8G130900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 25245939-25246938 Setaria italica
Seita.8G130900 1.0kb downstream 1.0kb downstream 20485 true scaffold_8: 25246939-25267423 Setaria italica
Seita.8G130900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 25266424-25267423 Setaria italica
Seita.8G130900 2.0kb upstream 2.0kb upstream 21485 true scaffold_8: 25244939-25266423 Setaria italica
Seita.8G130900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 25244939-25246938 Setaria italica
Seita.8G130900 2.0kb downstream 2.0kb downstream 21485 true scaffold_8: 25246939-25268423 Setaria italica
Seita.8G130900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 25266424-25268423 Setaria italica
Seita.8G130900 5.0kb upstream 5.0kb upstream 24485 true scaffold_8: 25241939-25266423 Setaria italica
Seita.8G130900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 25241939-25246938 Setaria italica
Seita.8G130900 5.0kb downstream 5.0kb downstream 24485 true scaffold_8: 25246939-25271423 Setaria italica
Seita.8G130900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 25266424-25271423 Setaria italica
Seita.8G130900 10.0kb upstream 10.0kb upstream 29485 true scaffold_8: 25236939-25266423 Setaria italica
Seita.8G130900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 25236939-25246938 Setaria italica
Seita.8G130900 10.0kb downstream 10.0kb downstream 29485 true scaffold_8: 25246939-25276423 Setaria italica
Seita.8G130900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 25266424-25276423 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995960 5273 Angiosperm View MSA
122063286 5267 Panicoideae View MSA
124590292 5269 Grass View MSA
121266136 5274 Embryophyte View MSA
123304489 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.015     Low  
cufflinks 0.281       High
cufflinks 0.001     Low Low
cufflinks 0.003     Low  
cufflinks 0.001     Low Low
cufflinks 0.238       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.015     Low  
cufflinks 0.001     Low Low
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain