Gene : Seita.8G142300 S. italica v2.2
Defline:  (1 of 1) PTHR10804:SF87 - XAA-PRO AMINOPEPTIDASE 1 Genomic Order:  1423
Name:  ? Seita.8G142300 Secondary Identifier:  ? PAC:32717888
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G142300 0.5kb upstream 0.5kb upstream 8786 true scaffold_8: 27683709-27692494 Setaria italica
Seita.8G142300 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 27683709-27684208 Setaria italica
Seita.8G142300 0.5kb downstream 0.5kb downstream 8786 true scaffold_8: 27684209-27692994 Setaria italica
Seita.8G142300 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 27692495-27692994 Setaria italica
Seita.8G142300 1.0kb upstream 1.0kb upstream 9286 true scaffold_8: 27683209-27692494 Setaria italica
Seita.8G142300 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 27683209-27684208 Setaria italica
Seita.8G142300 1.0kb downstream 1.0kb downstream 9286 true scaffold_8: 27684209-27693494 Setaria italica
Seita.8G142300 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 27692495-27693494 Setaria italica
Seita.8G142300 2.0kb upstream 2.0kb upstream 10286 true scaffold_8: 27682209-27692494 Setaria italica
Seita.8G142300 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 27682209-27684208 Setaria italica
Seita.8G142300 2.0kb downstream 2.0kb downstream 10286 true scaffold_8: 27684209-27694494 Setaria italica
Seita.8G142300 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 27692495-27694494 Setaria italica
Seita.8G142300 5.0kb upstream 5.0kb upstream 13286 true scaffold_8: 27679209-27692494 Setaria italica
Seita.8G142300 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 27679209-27684208 Setaria italica
Seita.8G142300 5.0kb downstream 5.0kb downstream 13286 true scaffold_8: 27684209-27697494 Setaria italica
Seita.8G142300 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 27692495-27697494 Setaria italica
Seita.8G142300 10.0kb upstream 10.0kb upstream 18286 true scaffold_8: 27674209-27692494 Setaria italica
Seita.8G142300 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 27674209-27684208 Setaria italica
Seita.8G142300 10.0kb downstream 10.0kb downstream 18286 true scaffold_8: 27684209-27702494 Setaria italica
Seita.8G142300 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 27692495-27702494 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185416 5267 Panicoideae View MSA
124582309 5269 Grass View MSA
122044333 5273 Angiosperm View MSA
121348715 5274 Embryophyte View MSA
123426779 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.939     High  
cufflinks 16.24     High  
cufflinks 27.572     High High
cufflinks 27.503     High High
cufflinks 18.499     High  
cufflinks 14.968     High  
cufflinks 10.149       Low
cufflinks 17.139     High  
cufflinks 16.033     High  
cufflinks 12.183        
cufflinks 16.04     High  
cufflinks 16.65     High  
cufflinks 19.013     High  
cufflinks 22.972     High High
cufflinks 15.823     High  
cufflinks 8.183       Low
cufflinks 15.445     High  
cufflinks 16.288     High  
cufflinks 15.775     High  
cufflinks 15.175     High  

0 Strain