Gene : Seita.8G109700 S. italica v2.2
Defline:  (1 of 1) PTHR15039:SF11 - DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN Genomic Order:  1097
Name:  ? Seita.8G109700 Secondary Identifier:  ? PAC:32715288
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G109700 0.5kb upstream 0.5kb upstream 6405 true scaffold_8: 16936526-16942930 Setaria italica
Seita.8G109700 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 16942431-16942930 Setaria italica
Seita.8G109700 0.5kb downstream 0.5kb downstream 6405 true scaffold_8: 16936026-16942430 Setaria italica
Seita.8G109700 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 16936026-16936525 Setaria italica
Seita.8G109700 1.0kb upstream 1.0kb upstream 6905 true scaffold_8: 16936526-16943430 Setaria italica
Seita.8G109700 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 16942431-16943430 Setaria italica
Seita.8G109700 1.0kb downstream 1.0kb downstream 6905 true scaffold_8: 16935526-16942430 Setaria italica
Seita.8G109700 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 16935526-16936525 Setaria italica
Seita.8G109700 2.0kb upstream 2.0kb upstream 7905 true scaffold_8: 16936526-16944430 Setaria italica
Seita.8G109700 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 16942431-16944430 Setaria italica
Seita.8G109700 2.0kb downstream 2.0kb downstream 7905 true scaffold_8: 16934526-16942430 Setaria italica
Seita.8G109700 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 16934526-16936525 Setaria italica
Seita.8G109700 5.0kb upstream 5.0kb upstream 10905 true scaffold_8: 16936526-16947430 Setaria italica
Seita.8G109700 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 16942431-16947430 Setaria italica
Seita.8G109700 5.0kb downstream 5.0kb downstream 10905 true scaffold_8: 16931526-16942430 Setaria italica
Seita.8G109700 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 16931526-16936525 Setaria italica
Seita.8G109700 10.0kb upstream 10.0kb upstream 15905 true scaffold_8: 16936526-16952430 Setaria italica
Seita.8G109700 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 16942431-16952430 Setaria italica
Seita.8G109700 10.0kb downstream 10.0kb downstream 15905 true scaffold_8: 16926526-16942430 Setaria italica
Seita.8G109700 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 16926526-16936525 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198715 5267 Panicoideae View MSA
124570008 5269 Grass View MSA
122048718 5273 Angiosperm View MSA
121349039 5274 Embryophyte View MSA
123381135 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.635        
cufflinks 1.12        
cufflinks 0.455        
cufflinks 0.239       Low
cufflinks 0.259       Low
cufflinks 1.144        
cufflinks 0.545        
cufflinks 1.328       High
cufflinks 0.661        
cufflinks 1.98       High
cufflinks 0.911        
cufflinks 0.937        
cufflinks 0.707        
cufflinks 0.675        
cufflinks 1.225        
cufflinks 0.292       Low
cufflinks 1.377       High
cufflinks 0.205       Low
cufflinks 0.299       Low
cufflinks 1.341       High

0 Strain