Gene : Seita.8G116700 S. italica v2.2
Defline:  (1 of 2) PTHR12506//PTHR12506:SF25 - PROTEIN PHOSPHATASE RELATED Genomic Order:  1167
Name:  ? Seita.8G116700 Secondary Identifier:  ? PAC:32717442
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G116700 0.5kb upstream 0.5kb upstream 10304 true scaffold_8: 21647893-21658196 Setaria italica
Seita.8G116700 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 21647893-21648392 Setaria italica
Seita.8G116700 0.5kb downstream 0.5kb downstream 10304 true scaffold_8: 21648393-21658696 Setaria italica
Seita.8G116700 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 21658197-21658696 Setaria italica
Seita.8G116700 1.0kb upstream 1.0kb upstream 10804 true scaffold_8: 21647393-21658196 Setaria italica
Seita.8G116700 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 21647393-21648392 Setaria italica
Seita.8G116700 1.0kb downstream 1.0kb downstream 10804 true scaffold_8: 21648393-21659196 Setaria italica
Seita.8G116700 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 21658197-21659196 Setaria italica
Seita.8G116700 2.0kb upstream 2.0kb upstream 11804 true scaffold_8: 21646393-21658196 Setaria italica
Seita.8G116700 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 21646393-21648392 Setaria italica
Seita.8G116700 2.0kb downstream 2.0kb downstream 11804 true scaffold_8: 21648393-21660196 Setaria italica
Seita.8G116700 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 21658197-21660196 Setaria italica
Seita.8G116700 5.0kb upstream 5.0kb upstream 14804 true scaffold_8: 21643393-21658196 Setaria italica
Seita.8G116700 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 21643393-21648392 Setaria italica
Seita.8G116700 5.0kb downstream 5.0kb downstream 14804 true scaffold_8: 21648393-21663196 Setaria italica
Seita.8G116700 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 21658197-21663196 Setaria italica
Seita.8G116700 10.0kb upstream 10.0kb upstream 19804 true scaffold_8: 21638393-21658196 Setaria italica
Seita.8G116700 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 21638393-21648392 Setaria italica
Seita.8G116700 10.0kb downstream 10.0kb downstream 19804 true scaffold_8: 21648393-21668196 Setaria italica
Seita.8G116700 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 21658197-21668196 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183615 5267 Panicoideae View MSA
124574800 5269 Grass View MSA
122047416 5273 Angiosperm View MSA
121348027 5274 Embryophyte View MSA
123428726 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.626        
cufflinks 2.028        
cufflinks 1.532        
cufflinks 1.747        
cufflinks 2.647       High
cufflinks 1.947        
cufflinks 1.971        
cufflinks 2.88       High
cufflinks 2.449        
cufflinks 1.763        
cufflinks 2.035        
cufflinks 1.078       Low
cufflinks 1.765        
cufflinks 1.352        
cufflinks 1.387        
cufflinks 2.072        
cufflinks 1.185       Low
cufflinks 0.651       Low
cufflinks 2.813       High
cufflinks 1.342        

0 Strain