Gene : Seita.8G115700 S. italica v2.2
Defline:  (1 of 1) PTHR31808:SF2 - F21O3.2 PROTEIN-RELATED Genomic Order:  1157
Name:  ? Seita.8G115700 Secondary Identifier:  ? PAC:32716649
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G115700 0.5kb upstream 0.5kb upstream 4078 true scaffold_8: 21486117-21490194 Setaria italica
Seita.8G115700 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 21489695-21490194 Setaria italica
Seita.8G115700 0.5kb downstream 0.5kb downstream 4078 true scaffold_8: 21485617-21489694 Setaria italica
Seita.8G115700 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 21485617-21486116 Setaria italica
Seita.8G115700 1.0kb upstream 1.0kb upstream 4578 true scaffold_8: 21486117-21490694 Setaria italica
Seita.8G115700 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 21489695-21490694 Setaria italica
Seita.8G115700 1.0kb downstream 1.0kb downstream 4578 true scaffold_8: 21485117-21489694 Setaria italica
Seita.8G115700 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 21485117-21486116 Setaria italica
Seita.8G115700 2.0kb upstream 2.0kb upstream 5578 true scaffold_8: 21486117-21491694 Setaria italica
Seita.8G115700 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 21489695-21491694 Setaria italica
Seita.8G115700 2.0kb downstream 2.0kb downstream 5578 true scaffold_8: 21484117-21489694 Setaria italica
Seita.8G115700 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 21484117-21486116 Setaria italica
Seita.8G115700 5.0kb upstream 5.0kb upstream 8578 true scaffold_8: 21486117-21494694 Setaria italica
Seita.8G115700 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 21489695-21494694 Setaria italica
Seita.8G115700 5.0kb downstream 5.0kb downstream 8578 true scaffold_8: 21481117-21489694 Setaria italica
Seita.8G115700 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 21481117-21486116 Setaria italica
Seita.8G115700 10.0kb upstream 10.0kb upstream 13578 true scaffold_8: 21486117-21499694 Setaria italica
Seita.8G115700 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 21489695-21499694 Setaria italica
Seita.8G115700 10.0kb downstream 10.0kb downstream 13578 true scaffold_8: 21476117-21489694 Setaria italica
Seita.8G115700 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 21476117-21486116 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182539 5267 Panicoideae View MSA
124573879 5269 Grass View MSA
122047287 5273 Angiosperm View MSA
121310722 5274 Embryophyte View MSA
123428654 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.734        
cufflinks 5.085        
cufflinks 62.605     High High
cufflinks 58.572     High High
cufflinks 58.765     High High
cufflinks 5.604        
cufflinks 20.965     High  
cufflinks 28.245     High  
cufflinks 25.23     High  
cufflinks 4.015       Low
cufflinks 4.026       Low
cufflinks 10.056        
cufflinks 8.132        
cufflinks 30.688     High  
cufflinks 3.14       Low
cufflinks 29.147     High  
cufflinks 5.305        
cufflinks 21.038     High  
cufflinks 43.372     High High
cufflinks 3.59       Low

0 Strain