Gene : Seita.8G229900 S. italica v2.2
Defline:  (1 of 6) PTHR23241//PTHR23241:SF55 - LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED Genomic Order:  2299
Name:  ? Seita.8G229900 Secondary Identifier:  ? PAC:32716790
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G229900 0.5kb upstream 0.5kb upstream 4243 true scaffold_8: 38186537-38190779 Setaria italica
Seita.8G229900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 38190280-38190779 Setaria italica
Seita.8G229900 0.5kb downstream 0.5kb downstream 4243 true scaffold_8: 38186037-38190279 Setaria italica
Seita.8G229900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 38186037-38186536 Setaria italica
Seita.8G229900 1.0kb upstream 1.0kb upstream 4743 true scaffold_8: 38186537-38191279 Setaria italica
Seita.8G229900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 38190280-38191279 Setaria italica
Seita.8G229900 1.0kb downstream 1.0kb downstream 4743 true scaffold_8: 38185537-38190279 Setaria italica
Seita.8G229900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 38185537-38186536 Setaria italica
Seita.8G229900 2.0kb upstream 2.0kb upstream 5743 true scaffold_8: 38186537-38192279 Setaria italica
Seita.8G229900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 38190280-38192279 Setaria italica
Seita.8G229900 2.0kb downstream 2.0kb downstream 5743 true scaffold_8: 38184537-38190279 Setaria italica
Seita.8G229900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 38184537-38186536 Setaria italica
Seita.8G229900 5.0kb upstream 5.0kb upstream 8743 true scaffold_8: 38186537-38195279 Setaria italica
Seita.8G229900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 38190280-38195279 Setaria italica
Seita.8G229900 5.0kb downstream 5.0kb downstream 8743 true scaffold_8: 38181537-38190279 Setaria italica
Seita.8G229900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 38181537-38186536 Setaria italica
Seita.8G229900 10.0kb upstream 10.0kb upstream 13743 true scaffold_8: 38186537-38200279 Setaria italica
Seita.8G229900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 38190280-38200279 Setaria italica
Seita.8G229900 10.0kb downstream 10.0kb downstream 13743 true scaffold_8: 38176537-38190279 Setaria italica
Seita.8G229900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 38176537-38186536 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181682 5267 Panicoideae View MSA
124573218 5269 Grass View MSA
122045721 5273 Angiosperm View MSA
121349691 5274 Embryophyte View MSA
123428296 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.769        
cufflinks 2.641        
cufflinks 0.571        
cufflinks 0.376       Low
cufflinks 0.288       Low
cufflinks 2.633        
cufflinks 0.984        
cufflinks 0.688        
cufflinks 0.32       Low
cufflinks 5.593       High
cufflinks 2.145        
cufflinks 2.349        
cufflinks 4.723       High
cufflinks 1.383        
cufflinks 3.9       High
cufflinks 0.949        
cufflinks 5.485       High
cufflinks 1.388        
cufflinks 0.572        
cufflinks 2.831        

0 Strain