Gene : Seita.9G001200 S. italica v2.2
Defline:  (1 of 1) PTHR11260:SF220 - GST-CONTAINING FLYWCH ZINC-FINGER PROTEIN Genomic Order:  12
Name:  ? Seita.9G001200 Secondary Identifier:  ? PAC:32688491
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6842 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G001200 0.5kb upstream 0.5kb upstream 3961 true scaffold_9: 110344-114304 Setaria italica
Seita.9G001200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 110344-110843 Setaria italica
Seita.9G001200 0.5kb downstream 0.5kb downstream 3961 true scaffold_9: 110844-114804 Setaria italica
Seita.9G001200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 114305-114804 Setaria italica
Seita.9G001200 1.0kb upstream 1.0kb upstream 4461 true scaffold_9: 109844-114304 Setaria italica
Seita.9G001200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 109844-110843 Setaria italica
Seita.9G001200 1.0kb downstream 1.0kb downstream 4461 true scaffold_9: 110844-115304 Setaria italica
Seita.9G001200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 114305-115304 Setaria italica
Seita.9G001200 2.0kb upstream 2.0kb upstream 5461 true scaffold_9: 108844-114304 Setaria italica
Seita.9G001200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 108844-110843 Setaria italica
Seita.9G001200 2.0kb downstream 2.0kb downstream 5461 true scaffold_9: 110844-116304 Setaria italica
Seita.9G001200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 114305-116304 Setaria italica
Seita.9G001200 5.0kb upstream 5.0kb upstream 8461 true scaffold_9: 105844-114304 Setaria italica
Seita.9G001200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 105844-110843 Setaria italica
Seita.9G001200 5.0kb downstream 5.0kb downstream 8461 true scaffold_9: 110844-119304 Setaria italica
Seita.9G001200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 114305-119304 Setaria italica
Seita.9G001200 10.0kb upstream 10.0kb upstream 13461 true scaffold_9: 100844-114304 Setaria italica
Seita.9G001200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 100844-110843 Setaria italica
Seita.9G001200 10.0kb downstream 10.0kb downstream 13461 true scaffold_9: 110844-124304 Setaria italica
Seita.9G001200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 114305-124304 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040873 5273 Angiosperm View MSA
122180950 5267 Panicoideae View MSA
124585704 5269 Grass View MSA
121350998 5274 Embryophyte View MSA
123428193 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.522        
cufflinks 14.761     High  
cufflinks 9.806        
cufflinks 10.684        
cufflinks 8.422       Low
cufflinks 13.586     High  
cufflinks 9.767        
cufflinks 12.773        
cufflinks 10.115        
cufflinks 16.497     High High
cufflinks 13.739     High  
cufflinks 15.393     High  
cufflinks 18.971     High High
cufflinks 10.266        
cufflinks 17.532     High High
cufflinks 6.897       Low
cufflinks 16.63     High High
cufflinks 5.971       Low
cufflinks 12.312     High  
cufflinks 12.797        

0 Strain