Gene : Seita.8G199500 S. italica v2.2
Defline:  (1 of 32) PTHR23155//PTHR23155:SF484 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN Genomic Order:  1995
Name:  ? Seita.8G199500 Secondary Identifier:  ? PAC:32716810
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G199500 0.5kb upstream 0.5kb upstream 4689 true scaffold_8: 34536331-34541019 Setaria italica
Seita.8G199500 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 34540520-34541019 Setaria italica
Seita.8G199500 0.5kb downstream 0.5kb downstream 4689 true scaffold_8: 34535831-34540519 Setaria italica
Seita.8G199500 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 34535831-34536330 Setaria italica
Seita.8G199500 1.0kb upstream 1.0kb upstream 5189 true scaffold_8: 34536331-34541519 Setaria italica
Seita.8G199500 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 34540520-34541519 Setaria italica
Seita.8G199500 1.0kb downstream 1.0kb downstream 5189 true scaffold_8: 34535331-34540519 Setaria italica
Seita.8G199500 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 34535331-34536330 Setaria italica
Seita.8G199500 2.0kb upstream 2.0kb upstream 6189 true scaffold_8: 34536331-34542519 Setaria italica
Seita.8G199500 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 34540520-34542519 Setaria italica
Seita.8G199500 2.0kb downstream 2.0kb downstream 6189 true scaffold_8: 34534331-34540519 Setaria italica
Seita.8G199500 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 34534331-34536330 Setaria italica
Seita.8G199500 5.0kb upstream 5.0kb upstream 9189 true scaffold_8: 34536331-34545519 Setaria italica
Seita.8G199500 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 34540520-34545519 Setaria italica
Seita.8G199500 5.0kb downstream 5.0kb downstream 9189 true scaffold_8: 34531331-34540519 Setaria italica
Seita.8G199500 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 34531331-34536330 Setaria italica
Seita.8G199500 10.0kb upstream 10.0kb upstream 14189 true scaffold_8: 34536331-34550519 Setaria italica
Seita.8G199500 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 34540520-34550519 Setaria italica
Seita.8G199500 10.0kb downstream 10.0kb downstream 14189 true scaffold_8: 34526331-34540519 Setaria italica
Seita.8G199500 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 34526331-34536330 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122063598 5267 Panicoideae View MSA
124590789 5269 Grass View MSA
122051706 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.487     High High
cufflinks 23.573     High  
cufflinks 5.71       Low
cufflinks 3.167       Low
cufflinks 4.844       Low
cufflinks 20.22     High  
cufflinks 21.437     High  
cufflinks 9.002        
cufflinks 12.004        
cufflinks 7.672        
cufflinks 29.226     High High
cufflinks 13.618     High  
cufflinks 18.02     High  
cufflinks 13.457        
cufflinks 32.016     High High
cufflinks 10.162        
cufflinks 19.246     High  
cufflinks 7.957        
cufflinks 9.779        
cufflinks 18.72     High  

0 Strain