Gene : Seita.9G054200 S. italica v2.2
Defline:  (1 of 123) PF07762 - Protein of unknown function (DUF1618) (DUF1618) Genomic Order:  542
Name:  ? Seita.9G054200 Secondary Identifier:  ? PAC:32689212
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G054200 0.5kb upstream 0.5kb upstream 1737 true scaffold_9: 3136820-3138556 Setaria italica
Seita.9G054200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 3136820-3137319 Setaria italica
Seita.9G054200 0.5kb downstream 0.5kb downstream 1737 true scaffold_9: 3137320-3139056 Setaria italica
Seita.9G054200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 3138557-3139056 Setaria italica
Seita.9G054200 1.0kb upstream 1.0kb upstream 2237 true scaffold_9: 3136320-3138556 Setaria italica
Seita.9G054200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 3136320-3137319 Setaria italica
Seita.9G054200 1.0kb downstream 1.0kb downstream 2237 true scaffold_9: 3137320-3139556 Setaria italica
Seita.9G054200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 3138557-3139556 Setaria italica
Seita.9G054200 2.0kb upstream 2.0kb upstream 3237 true scaffold_9: 3135320-3138556 Setaria italica
Seita.9G054200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 3135320-3137319 Setaria italica
Seita.9G054200 2.0kb downstream 2.0kb downstream 3237 true scaffold_9: 3137320-3140556 Setaria italica
Seita.9G054200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 3138557-3140556 Setaria italica
Seita.9G054200 5.0kb upstream 5.0kb upstream 6237 true scaffold_9: 3132320-3138556 Setaria italica
Seita.9G054200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 3132320-3137319 Setaria italica
Seita.9G054200 5.0kb downstream 5.0kb downstream 6237 true scaffold_9: 3137320-3143556 Setaria italica
Seita.9G054200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 3138557-3143556 Setaria italica
Seita.9G054200 10.0kb upstream 10.0kb upstream 11237 true scaffold_9: 3127320-3138556 Setaria italica
Seita.9G054200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 3127320-3137319 Setaria italica
Seita.9G054200 10.0kb downstream 10.0kb downstream 11237 true scaffold_9: 3137320-3148556 Setaria italica
Seita.9G054200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 3138557-3148556 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994770 5273 Angiosperm View MSA
122193733 5267 Panicoideae View MSA
124585583 5269 Grass View MSA
121264986 5274 Embryophyte View MSA
123303402 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.08     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.045     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.027     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.042     Low  

0 Strain