Gene : Seita.9G057500 S. italica v2.2
Defline:  (1 of 3) PTHR12341:SF30 - 5'-3' EXORIBONUCLEASE 2-RELATED Genomic Order:  575
Name:  ? Seita.9G057500 Secondary Identifier:  ? PAC:32692142
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G057500 0.5kb upstream 0.5kb upstream 9814 true scaffold_9: 3330566-3340379 Setaria italica
Seita.9G057500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 3339880-3340379 Setaria italica
Seita.9G057500 0.5kb downstream 0.5kb downstream 9814 true scaffold_9: 3330066-3339879 Setaria italica
Seita.9G057500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 3330066-3330565 Setaria italica
Seita.9G057500 1.0kb upstream 1.0kb upstream 10314 true scaffold_9: 3330566-3340879 Setaria italica
Seita.9G057500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 3339880-3340879 Setaria italica
Seita.9G057500 1.0kb downstream 1.0kb downstream 10314 true scaffold_9: 3329566-3339879 Setaria italica
Seita.9G057500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 3329566-3330565 Setaria italica
Seita.9G057500 2.0kb upstream 2.0kb upstream 11314 true scaffold_9: 3330566-3341879 Setaria italica
Seita.9G057500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 3339880-3341879 Setaria italica
Seita.9G057500 2.0kb downstream 2.0kb downstream 11314 true scaffold_9: 3328566-3339879 Setaria italica
Seita.9G057500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 3328566-3330565 Setaria italica
Seita.9G057500 5.0kb upstream 5.0kb upstream 14314 true scaffold_9: 3330566-3344879 Setaria italica
Seita.9G057500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 3339880-3344879 Setaria italica
Seita.9G057500 5.0kb downstream 5.0kb downstream 14314 true scaffold_9: 3325566-3339879 Setaria italica
Seita.9G057500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 3325566-3330565 Setaria italica
Seita.9G057500 10.0kb upstream 10.0kb upstream 19314 true scaffold_9: 3330566-3349879 Setaria italica
Seita.9G057500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 3339880-3349879 Setaria italica
Seita.9G057500 10.0kb downstream 10.0kb downstream 19314 true scaffold_9: 3320566-3339879 Setaria italica
Seita.9G057500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 3320566-3330565 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183240 5267 Panicoideae View MSA
124582971 5269 Grass View MSA
122042624 5273 Angiosperm View MSA
123429022 5275 Viridiplantae View MSA
121350547 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.25     High High
cufflinks 18.499     High  
cufflinks 17.973     High  
cufflinks 17.807     High  
cufflinks 14.469     High  
cufflinks 20.321     High  
cufflinks 22.08     High  
cufflinks 13.279        
cufflinks 14.228     High  
cufflinks 16.299     High  
cufflinks 24.154     High  
cufflinks 19.824     High  
cufflinks 17.049     High  
cufflinks 12.228       Low
cufflinks 14.976     High  
cufflinks 37.212     High High
cufflinks 15.967     High  
cufflinks 54.797     High High
cufflinks 11.965     High Low
cufflinks 16.359     High  

0 Strain