Gene : Seita.9G075800 S. italica v2.2
Defline:  (1 of 1) PTHR31566:SF0 - CYTOCHROME C BIOGENESIS PROTEIN CCS1, CHLOROPLASTIC Genomic Order:  758
Name:  ? Seita.9G075800 Secondary Identifier:  ? PAC:32686779
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G075800 0.5kb upstream 0.5kb upstream 3329 true scaffold_9: 4474397-4477725 Setaria italica
Seita.9G075800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4474397-4474896 Setaria italica
Seita.9G075800 0.5kb downstream 0.5kb downstream 3329 true scaffold_9: 4474897-4478225 Setaria italica
Seita.9G075800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4477726-4478225 Setaria italica
Seita.9G075800 1.0kb upstream 1.0kb upstream 3829 true scaffold_9: 4473897-4477725 Setaria italica
Seita.9G075800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4473897-4474896 Setaria italica
Seita.9G075800 1.0kb downstream 1.0kb downstream 3829 true scaffold_9: 4474897-4478725 Setaria italica
Seita.9G075800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4477726-4478725 Setaria italica
Seita.9G075800 2.0kb upstream 2.0kb upstream 4829 true scaffold_9: 4472897-4477725 Setaria italica
Seita.9G075800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4472897-4474896 Setaria italica
Seita.9G075800 2.0kb downstream 2.0kb downstream 4829 true scaffold_9: 4474897-4479725 Setaria italica
Seita.9G075800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4477726-4479725 Setaria italica
Seita.9G075800 5.0kb upstream 5.0kb upstream 7829 true scaffold_9: 4469897-4477725 Setaria italica
Seita.9G075800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4469897-4474896 Setaria italica
Seita.9G075800 5.0kb downstream 5.0kb downstream 7829 true scaffold_9: 4474897-4482725 Setaria italica
Seita.9G075800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4477726-4482725 Setaria italica
Seita.9G075800 10.0kb upstream 10.0kb upstream 12829 true scaffold_9: 4464897-4477725 Setaria italica
Seita.9G075800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4464897-4474896 Setaria italica
Seita.9G075800 10.0kb downstream 10.0kb downstream 12829 true scaffold_9: 4474897-4487725 Setaria italica
Seita.9G075800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4477726-4487725 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198199 5267 Panicoideae View MSA
124571675 5269 Grass View MSA
122043580 5273 Angiosperm View MSA
121347633 5274 Embryophyte View MSA
123425145 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.464     High  
cufflinks 13.683     High  
cufflinks 107.4     High High
cufflinks 99.612     High High
cufflinks 81.934     High High
cufflinks 15.284     High  
cufflinks 32.275     High  
cufflinks 47.996     High  
cufflinks 75.956     High  
cufflinks 5.62        
cufflinks 10.808        
cufflinks 2.066       Low
cufflinks 1.936       Low
cufflinks 70.984     High  
cufflinks 0.571       Low
cufflinks 45.01     High  
cufflinks 1.928       Low
cufflinks 18.349     High  
cufflinks 56.418     High  
cufflinks 0.635       Low

0 Strain