Gene : Seita.9G074400 S. italica v2.2
Defline:  (1 of 1) PTHR11504 - CYTOCHROME C OXIDASE POLYPEPTIDE VIA Genomic Order:  744
Name:  ? Seita.9G074400 Secondary Identifier:  ? PAC:32686937
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-7279 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G074400 0.5kb upstream 0.5kb upstream 2662 true scaffold_9: 4357153-4359814 Setaria italica
Seita.9G074400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4359315-4359814 Setaria italica
Seita.9G074400 0.5kb downstream 0.5kb downstream 2662 true scaffold_9: 4356653-4359314 Setaria italica
Seita.9G074400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4356653-4357152 Setaria italica
Seita.9G074400 1.0kb upstream 1.0kb upstream 3162 true scaffold_9: 4357153-4360314 Setaria italica
Seita.9G074400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4359315-4360314 Setaria italica
Seita.9G074400 1.0kb downstream 1.0kb downstream 3162 true scaffold_9: 4356153-4359314 Setaria italica
Seita.9G074400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4356153-4357152 Setaria italica
Seita.9G074400 2.0kb upstream 2.0kb upstream 4162 true scaffold_9: 4357153-4361314 Setaria italica
Seita.9G074400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4359315-4361314 Setaria italica
Seita.9G074400 2.0kb downstream 2.0kb downstream 4162 true scaffold_9: 4355153-4359314 Setaria italica
Seita.9G074400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4355153-4357152 Setaria italica
Seita.9G074400 5.0kb upstream 5.0kb upstream 7162 true scaffold_9: 4357153-4364314 Setaria italica
Seita.9G074400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4359315-4364314 Setaria italica
Seita.9G074400 5.0kb downstream 5.0kb downstream 7162 true scaffold_9: 4352153-4359314 Setaria italica
Seita.9G074400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4352153-4357152 Setaria italica
Seita.9G074400 10.0kb upstream 10.0kb upstream 12162 true scaffold_9: 4357153-4369314 Setaria italica
Seita.9G074400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4359315-4369314 Setaria italica
Seita.9G074400 10.0kb downstream 10.0kb downstream 12162 true scaffold_9: 4347153-4359314 Setaria italica
Seita.9G074400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4347153-4357152 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183358 5267 Panicoideae View MSA
124578977 5269 Grass View MSA
122043726 5273 Angiosperm View MSA
121349010 5274 Embryophyte View MSA
123424511 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.046        
cufflinks 20.497     High  
cufflinks 7.057       Low
cufflinks 10.925     High  
cufflinks 12.413     High  
cufflinks 17.76     High  
cufflinks 11.322        
cufflinks 35.032     High High
cufflinks 15.969     High  
cufflinks 58.711     High High
cufflinks 15.573     High  
cufflinks 24.77     High  
cufflinks 29.099     High  
cufflinks 15.853     High  
cufflinks 26.622     High  
cufflinks 5.881       Low
cufflinks 39.477     High High
cufflinks 4.546       Low
cufflinks 13.633     High  
cufflinks 37.984     High High

0 Strain