Gene : Seita.9G078000 S. italica v2.2
Defline:  (1 of 1) PTHR12970 - TUMOR NECROSIS FACTOR SUPERFAMILY, MEMBER 5-INDUCED PROTEIN 1 CLAST3 Genomic Order:  780
Name:  ? Seita.9G078000 Secondary Identifier:  ? PAC:32688807
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G078000 0.5kb upstream 0.5kb upstream 4368 true scaffold_9: 4592927-4597294 Setaria italica
Seita.9G078000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4596795-4597294 Setaria italica
Seita.9G078000 0.5kb downstream 0.5kb downstream 4368 true scaffold_9: 4592427-4596794 Setaria italica
Seita.9G078000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4592427-4592926 Setaria italica
Seita.9G078000 1.0kb upstream 1.0kb upstream 4868 true scaffold_9: 4592927-4597794 Setaria italica
Seita.9G078000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4596795-4597794 Setaria italica
Seita.9G078000 1.0kb downstream 1.0kb downstream 4868 true scaffold_9: 4591927-4596794 Setaria italica
Seita.9G078000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4591927-4592926 Setaria italica
Seita.9G078000 2.0kb upstream 2.0kb upstream 5868 true scaffold_9: 4592927-4598794 Setaria italica
Seita.9G078000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4596795-4598794 Setaria italica
Seita.9G078000 2.0kb downstream 2.0kb downstream 5868 true scaffold_9: 4590927-4596794 Setaria italica
Seita.9G078000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4590927-4592926 Setaria italica
Seita.9G078000 5.0kb upstream 5.0kb upstream 8868 true scaffold_9: 4592927-4601794 Setaria italica
Seita.9G078000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4596795-4601794 Setaria italica
Seita.9G078000 5.0kb downstream 5.0kb downstream 8868 true scaffold_9: 4587927-4596794 Setaria italica
Seita.9G078000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4587927-4592926 Setaria italica
Seita.9G078000 10.0kb upstream 10.0kb upstream 13868 true scaffold_9: 4592927-4606794 Setaria italica
Seita.9G078000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4596795-4606794 Setaria italica
Seita.9G078000 10.0kb downstream 10.0kb downstream 13868 true scaffold_9: 4582927-4596794 Setaria italica
Seita.9G078000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4582927-4592926 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189518 5267 Panicoideae View MSA
124583641 5269 Grass View MSA
122043036 5273 Angiosperm View MSA
121344362 5274 Embryophyte View MSA
123425402 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.218       Low
cufflinks 5.806        
cufflinks 4.875        
cufflinks 4.909        
cufflinks 4.814        
cufflinks 5.701        
cufflinks 3.471       Low
cufflinks 7.077       High
cufflinks 5.143        
cufflinks 4.676        
cufflinks 3.739        
cufflinks 5.06        
cufflinks 3.477       Low
cufflinks 5.763        
cufflinks 5.069        
cufflinks 2.869       Low
cufflinks 5.775        
cufflinks 4.046        
cufflinks 2.927       Low
cufflinks 5.046        

0 Strain