Gene : Seita.9G076500 S. italica v2.2
Defline:  (1 of 2) PTHR20973 - NON-SMC ELEMENT 1-RELATED Genomic Order:  765
Name:  ? Seita.9G076500 Secondary Identifier:  ? PAC:32693779
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G076500 0.5kb upstream 0.5kb upstream 4664 true scaffold_9: 4504690-4509353 Setaria italica
Seita.9G076500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4508854-4509353 Setaria italica
Seita.9G076500 0.5kb downstream 0.5kb downstream 4664 true scaffold_9: 4504190-4508853 Setaria italica
Seita.9G076500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4504190-4504689 Setaria italica
Seita.9G076500 1.0kb upstream 1.0kb upstream 5164 true scaffold_9: 4504690-4509853 Setaria italica
Seita.9G076500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4508854-4509853 Setaria italica
Seita.9G076500 1.0kb downstream 1.0kb downstream 5164 true scaffold_9: 4503690-4508853 Setaria italica
Seita.9G076500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4503690-4504689 Setaria italica
Seita.9G076500 2.0kb upstream 2.0kb upstream 6164 true scaffold_9: 4504690-4510853 Setaria italica
Seita.9G076500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4508854-4510853 Setaria italica
Seita.9G076500 2.0kb downstream 2.0kb downstream 6164 true scaffold_9: 4502690-4508853 Setaria italica
Seita.9G076500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4502690-4504689 Setaria italica
Seita.9G076500 5.0kb upstream 5.0kb upstream 9164 true scaffold_9: 4504690-4513853 Setaria italica
Seita.9G076500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4508854-4513853 Setaria italica
Seita.9G076500 5.0kb downstream 5.0kb downstream 9164 true scaffold_9: 4499690-4508853 Setaria italica
Seita.9G076500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4499690-4504689 Setaria italica
Seita.9G076500 10.0kb upstream 10.0kb upstream 14164 true scaffold_9: 4504690-4518853 Setaria italica
Seita.9G076500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4508854-4518853 Setaria italica
Seita.9G076500 10.0kb downstream 10.0kb downstream 14164 true scaffold_9: 4494690-4508853 Setaria italica
Seita.9G076500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4494690-4504689 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183498 5267 Panicoideae View MSA
124576490 5269 Grass View MSA
122042015 5273 Angiosperm View MSA
121350451 5274 Embryophyte View MSA
123426397 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.482        
cufflinks 1.323       High
cufflinks 0.398        
cufflinks 0.275       Low
cufflinks 0.219       Low
cufflinks 1.323       High
cufflinks 0.507        
cufflinks 0.639        
cufflinks 0.399        
cufflinks 0.628        
cufflinks 0.484        
cufflinks 0.726        
cufflinks 0.453        
cufflinks 0.611        
cufflinks 0.641        
cufflinks 0.446        
cufflinks 0.789        
cufflinks 0.182       Low
cufflinks 0.316        
cufflinks 0.663        

0 Strain