Gene : Seita.9G091000 S. italica v2.2
Defline:  (1 of 1) PTHR22904:SF312 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  910
Name:  ? Seita.9G091000 Secondary Identifier:  ? PAC:32688045
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G091000 0.5kb upstream 0.5kb upstream 4595 true scaffold_9: 5490784-5495378 Setaria italica
Seita.9G091000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 5490784-5491283 Setaria italica
Seita.9G091000 0.5kb downstream 0.5kb downstream 4595 true scaffold_9: 5491284-5495878 Setaria italica
Seita.9G091000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 5495379-5495878 Setaria italica
Seita.9G091000 1.0kb upstream 1.0kb upstream 5095 true scaffold_9: 5490284-5495378 Setaria italica
Seita.9G091000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 5490284-5491283 Setaria italica
Seita.9G091000 1.0kb downstream 1.0kb downstream 5095 true scaffold_9: 5491284-5496378 Setaria italica
Seita.9G091000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 5495379-5496378 Setaria italica
Seita.9G091000 2.0kb upstream 2.0kb upstream 6095 true scaffold_9: 5489284-5495378 Setaria italica
Seita.9G091000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 5489284-5491283 Setaria italica
Seita.9G091000 2.0kb downstream 2.0kb downstream 6095 true scaffold_9: 5491284-5497378 Setaria italica
Seita.9G091000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 5495379-5497378 Setaria italica
Seita.9G091000 5.0kb upstream 5.0kb upstream 9095 true scaffold_9: 5486284-5495378 Setaria italica
Seita.9G091000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 5486284-5491283 Setaria italica
Seita.9G091000 5.0kb downstream 5.0kb downstream 9095 true scaffold_9: 5491284-5500378 Setaria italica
Seita.9G091000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 5495379-5500378 Setaria italica
Seita.9G091000 10.0kb upstream 10.0kb upstream 14095 true scaffold_9: 5481284-5495378 Setaria italica
Seita.9G091000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 5481284-5491283 Setaria italica
Seita.9G091000 10.0kb downstream 10.0kb downstream 14095 true scaffold_9: 5491284-5505378 Setaria italica
Seita.9G091000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 5495379-5505378 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184498 5267 Panicoideae View MSA
124570894 5269 Grass View MSA
122046706 5273 Angiosperm View MSA
121343893 5274 Embryophyte View MSA
123425417 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.76       High
cufflinks 3.246        
cufflinks 2.96        
cufflinks 3.395        
cufflinks 3.266        
cufflinks 2.526       Low
cufflinks 3.214        
cufflinks 4.031        
cufflinks 2.928        
cufflinks 8.79       High
cufflinks 5.519        
cufflinks 4.537        
cufflinks 3.626        
cufflinks 3.576        
cufflinks 4.337        
cufflinks 6.601       High
cufflinks 4.876        
cufflinks 12.241     High High
cufflinks 3.263        
cufflinks 3.485        

0 Strain