Gene : Seita.9G008100 S. italica v2.2
Defline:  (1 of 1) PTHR12169:SF5 - AFG1-LIKE ATPASE FAMILY PROTEIN Genomic Order:  81
Name:  ? Seita.9G008100 Secondary Identifier:  ? PAC:32687195
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G008100 0.5kb upstream 0.5kb upstream 7329 true scaffold_9: 430485-437813 Setaria italica
Seita.9G008100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 430485-430984 Setaria italica
Seita.9G008100 0.5kb downstream 0.5kb downstream 7329 true scaffold_9: 430985-438313 Setaria italica
Seita.9G008100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 437814-438313 Setaria italica
Seita.9G008100 1.0kb upstream 1.0kb upstream 7829 true scaffold_9: 429985-437813 Setaria italica
Seita.9G008100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 429985-430984 Setaria italica
Seita.9G008100 1.0kb downstream 1.0kb downstream 7829 true scaffold_9: 430985-438813 Setaria italica
Seita.9G008100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 437814-438813 Setaria italica
Seita.9G008100 2.0kb upstream 2.0kb upstream 8829 true scaffold_9: 428985-437813 Setaria italica
Seita.9G008100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 428985-430984 Setaria italica
Seita.9G008100 2.0kb downstream 2.0kb downstream 8829 true scaffold_9: 430985-439813 Setaria italica
Seita.9G008100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 437814-439813 Setaria italica
Seita.9G008100 5.0kb upstream 5.0kb upstream 11829 true scaffold_9: 425985-437813 Setaria italica
Seita.9G008100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 425985-430984 Setaria italica
Seita.9G008100 5.0kb downstream 5.0kb downstream 11829 true scaffold_9: 430985-442813 Setaria italica
Seita.9G008100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 437814-442813 Setaria italica
Seita.9G008100 10.0kb upstream 10.0kb upstream 16829 true scaffold_9: 420985-437813 Setaria italica
Seita.9G008100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 420985-430984 Setaria italica
Seita.9G008100 10.0kb downstream 10.0kb downstream 16829 true scaffold_9: 430985-447813 Setaria italica
Seita.9G008100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 437814-447813 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183211 5267 Panicoideae View MSA
124579088 5269 Grass View MSA
122048281 5273 Angiosperm View MSA
121348170 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.425       Low
cufflinks 8.073        
cufflinks 6.665        
cufflinks 7.25        
cufflinks 8.563        
cufflinks 7.869        
cufflinks 6.379        
cufflinks 8.077        
cufflinks 7.061        
cufflinks 1.366       Low
cufflinks 2.332       Low
cufflinks 2.455       Low
cufflinks 4.13        
cufflinks 6.779        
cufflinks 2.671        
cufflinks 11.814       High
cufflinks 2.916        
cufflinks 2.395       Low
cufflinks 8.541        
cufflinks 3.047        

0 Strain