Gene : Seita.9G012500 S. italica v2.2
Defline:  (1 of 1) PTHR11751//PTHR11751:SF435 - SUBGROUP I AMINOTRANSFERASE RELATED Genomic Order:  125
Name:  ? Seita.9G012500 Secondary Identifier:  ? PAC:32689176
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica POLYAMINSYN3-PWY Setaria italica pathologic  
Sitalica PWY-43 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G012500 0.5kb upstream 0.5kb upstream 4152 true scaffold_9: 667737-671888 Setaria italica
Seita.9G012500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 667737-668236 Setaria italica
Seita.9G012500 0.5kb downstream 0.5kb downstream 4152 true scaffold_9: 668237-672388 Setaria italica
Seita.9G012500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 671889-672388 Setaria italica
Seita.9G012500 1.0kb upstream 1.0kb upstream 4652 true scaffold_9: 667237-671888 Setaria italica
Seita.9G012500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 667237-668236 Setaria italica
Seita.9G012500 1.0kb downstream 1.0kb downstream 4652 true scaffold_9: 668237-672888 Setaria italica
Seita.9G012500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 671889-672888 Setaria italica
Seita.9G012500 2.0kb upstream 2.0kb upstream 5652 true scaffold_9: 666237-671888 Setaria italica
Seita.9G012500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 666237-668236 Setaria italica
Seita.9G012500 2.0kb downstream 2.0kb downstream 5652 true scaffold_9: 668237-673888 Setaria italica
Seita.9G012500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 671889-673888 Setaria italica
Seita.9G012500 5.0kb upstream 5.0kb upstream 8652 true scaffold_9: 663237-671888 Setaria italica
Seita.9G012500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 663237-668236 Setaria italica
Seita.9G012500 5.0kb downstream 5.0kb downstream 8652 true scaffold_9: 668237-676888 Setaria italica
Seita.9G012500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 671889-676888 Setaria italica
Seita.9G012500 10.0kb upstream 10.0kb upstream 13652 true scaffold_9: 658237-671888 Setaria italica
Seita.9G012500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 658237-668236 Setaria italica
Seita.9G012500 10.0kb downstream 10.0kb downstream 13652 true scaffold_9: 668237-681888 Setaria italica
Seita.9G012500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 671889-681888 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187424 5267 Panicoideae View MSA
124582148 5269 Grass View MSA
122048497 5273 Angiosperm View MSA
121348486 5274 Embryophyte View MSA
123425712 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.015       High
cufflinks 0.587        
cufflinks 0.74        
cufflinks 0.38       Low
cufflinks 1.326        
cufflinks 0.61        
cufflinks 1.967       High
cufflinks 2.172       High
cufflinks 3.958       High
cufflinks 1.262        
cufflinks 1.453        
cufflinks 0.611        
cufflinks 0.452       Low
cufflinks 1.428        
cufflinks 0.546        
cufflinks 2.052       High
cufflinks 0.806        
cufflinks 1.165        
cufflinks 0.276       Low
cufflinks 0.619        

0 Strain