Gene : Seita.9G013500 S. italica v2.2
Defline:  (1 of 1) 6.2.1.20 - Long-chain-fatty-acid--[acyl-carrier-protein] ligase / Acyl-[acyl-carrier-protein] synthetase Genomic Order:  135
Name:  ? Seita.9G013500 Secondary Identifier:  ? PAC:32689002
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6622 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G013500 0.5kb upstream 0.5kb upstream 9047 true scaffold_9: 709600-718646 Setaria italica
Seita.9G013500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 709600-710099 Setaria italica
Seita.9G013500 0.5kb downstream 0.5kb downstream 9047 true scaffold_9: 710100-719146 Setaria italica
Seita.9G013500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 718647-719146 Setaria italica
Seita.9G013500 1.0kb upstream 1.0kb upstream 9547 true scaffold_9: 709100-718646 Setaria italica
Seita.9G013500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 709100-710099 Setaria italica
Seita.9G013500 1.0kb downstream 1.0kb downstream 9547 true scaffold_9: 710100-719646 Setaria italica
Seita.9G013500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 718647-719646 Setaria italica
Seita.9G013500 2.0kb upstream 2.0kb upstream 10547 true scaffold_9: 708100-718646 Setaria italica
Seita.9G013500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 708100-710099 Setaria italica
Seita.9G013500 2.0kb downstream 2.0kb downstream 10547 true scaffold_9: 710100-720646 Setaria italica
Seita.9G013500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 718647-720646 Setaria italica
Seita.9G013500 5.0kb upstream 5.0kb upstream 13547 true scaffold_9: 705100-718646 Setaria italica
Seita.9G013500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 705100-710099 Setaria italica
Seita.9G013500 5.0kb downstream 5.0kb downstream 13547 true scaffold_9: 710100-723646 Setaria italica
Seita.9G013500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 718647-723646 Setaria italica
Seita.9G013500 10.0kb upstream 10.0kb upstream 18547 true scaffold_9: 700100-718646 Setaria italica
Seita.9G013500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 700100-710099 Setaria italica
Seita.9G013500 10.0kb downstream 10.0kb downstream 18547 true scaffold_9: 710100-728646 Setaria italica
Seita.9G013500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 718647-728646 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182731 5267 Panicoideae View MSA
124571793 5269 Grass View MSA
122041588 5273 Angiosperm View MSA
121344484 5274 Embryophyte View MSA
123427454 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.636       High
cufflinks 3.864        
cufflinks 3.968        
cufflinks 3.63        
cufflinks 2.899        
cufflinks 3.298        
cufflinks 3.6        
cufflinks 4.108       High
cufflinks 2.784        
cufflinks 3.114        
cufflinks 3.262        
cufflinks 2.11       Low
cufflinks 2.628        
cufflinks 4.276       High
cufflinks 2.423       Low
cufflinks 3.578        
cufflinks 2.553       Low
cufflinks 3.687        
cufflinks 3.572        
cufflinks 2.361       Low

0 Strain