Gene : Seita.9G023800 S. italica v2.2
Defline:  (1 of 1) KOG1535 - Predicted fumarylacetoacetate hydralase Genomic Order:  238
Name:  ? Seita.9G023800 Secondary Identifier:  ? PAC:32693143
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G023800 0.5kb upstream 0.5kb upstream 3928 true scaffold_9: 1292502-1296429 Setaria italica
Seita.9G023800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1292502-1293001 Setaria italica
Seita.9G023800 0.5kb downstream 0.5kb downstream 3928 true scaffold_9: 1293002-1296929 Setaria italica
Seita.9G023800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1296430-1296929 Setaria italica
Seita.9G023800 1.0kb upstream 1.0kb upstream 4428 true scaffold_9: 1292002-1296429 Setaria italica
Seita.9G023800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1292002-1293001 Setaria italica
Seita.9G023800 1.0kb downstream 1.0kb downstream 4428 true scaffold_9: 1293002-1297429 Setaria italica
Seita.9G023800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1296430-1297429 Setaria italica
Seita.9G023800 2.0kb upstream 2.0kb upstream 5428 true scaffold_9: 1291002-1296429 Setaria italica
Seita.9G023800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1291002-1293001 Setaria italica
Seita.9G023800 2.0kb downstream 2.0kb downstream 5428 true scaffold_9: 1293002-1298429 Setaria italica
Seita.9G023800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1296430-1298429 Setaria italica
Seita.9G023800 5.0kb upstream 5.0kb upstream 8428 true scaffold_9: 1288002-1296429 Setaria italica
Seita.9G023800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1288002-1293001 Setaria italica
Seita.9G023800 5.0kb downstream 5.0kb downstream 8428 true scaffold_9: 1293002-1301429 Setaria italica
Seita.9G023800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1296430-1301429 Setaria italica
Seita.9G023800 10.0kb upstream 10.0kb upstream 13428 true scaffold_9: 1283002-1296429 Setaria italica
Seita.9G023800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1283002-1293001 Setaria italica
Seita.9G023800 10.0kb downstream 10.0kb downstream 13428 true scaffold_9: 1293002-1306429 Setaria italica
Seita.9G023800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1296430-1306429 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192254 5267 Panicoideae View MSA
124571812 5269 Grass View MSA
122046320 5273 Angiosperm View MSA
121345844 5274 Embryophyte View MSA
123427728 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.249       Low
cufflinks 6.958        
cufflinks 8.166        
cufflinks 13.385     High High
cufflinks 16.073     High High
cufflinks 6.685        
cufflinks 8.762        
cufflinks 14.38     High High
cufflinks 15.118     High High
cufflinks 5.765       Low
cufflinks 5.19       Low
cufflinks 7.989        
cufflinks 11.621        
cufflinks 7.19        
cufflinks 6.588        
cufflinks 7.427        
cufflinks 9.772        
cufflinks 7.124        
cufflinks 11.374     High  
cufflinks 8.853        

0 Strain