Gene : Seita.9G031600 S. italica v2.2
Defline:  (1 of 1) 2.1.1.166 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase / Um2552 methyltransferase Genomic Order:  316
Name:  ? Seita.9G031600 Secondary Identifier:  ? PAC:32693564
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G031600 0.5kb upstream 0.5kb upstream 3133 true scaffold_9: 1708068-1711200 Setaria italica
Seita.9G031600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1710701-1711200 Setaria italica
Seita.9G031600 0.5kb downstream 0.5kb downstream 3133 true scaffold_9: 1707568-1710700 Setaria italica
Seita.9G031600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1707568-1708067 Setaria italica
Seita.9G031600 1.0kb upstream 1.0kb upstream 3633 true scaffold_9: 1708068-1711700 Setaria italica
Seita.9G031600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1710701-1711700 Setaria italica
Seita.9G031600 1.0kb downstream 1.0kb downstream 3633 true scaffold_9: 1707068-1710700 Setaria italica
Seita.9G031600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1707068-1708067 Setaria italica
Seita.9G031600 2.0kb upstream 2.0kb upstream 4633 true scaffold_9: 1708068-1712700 Setaria italica
Seita.9G031600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1710701-1712700 Setaria italica
Seita.9G031600 2.0kb downstream 2.0kb downstream 4633 true scaffold_9: 1706068-1710700 Setaria italica
Seita.9G031600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1706068-1708067 Setaria italica
Seita.9G031600 5.0kb upstream 5.0kb upstream 7633 true scaffold_9: 1708068-1715700 Setaria italica
Seita.9G031600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1710701-1715700 Setaria italica
Seita.9G031600 5.0kb downstream 5.0kb downstream 7633 true scaffold_9: 1703068-1710700 Setaria italica
Seita.9G031600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1703068-1708067 Setaria italica
Seita.9G031600 10.0kb upstream 10.0kb upstream 12633 true scaffold_9: 1708068-1720700 Setaria italica
Seita.9G031600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1710701-1720700 Setaria italica
Seita.9G031600 10.0kb downstream 10.0kb downstream 12633 true scaffold_9: 1698068-1710700 Setaria italica
Seita.9G031600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1698068-1708067 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185982 5267 Panicoideae View MSA
124585151 5269 Grass View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.61        
cufflinks 4.981       High
cufflinks 1.038        
cufflinks 0.573       Low
cufflinks 0.605       Low
cufflinks 5.598       High
cufflinks 1.546        
cufflinks 2.496        
cufflinks 2.612        
cufflinks 3.788       High
cufflinks 2.114        
cufflinks 2.434        
cufflinks 2.238        
cufflinks 2.441        
cufflinks 2.259        
cufflinks 1.132        
cufflinks 3.44        
cufflinks 1.106        
cufflinks 0.904       Low
cufflinks 2.846        

0 Strain