Gene : Seita.9G040400 S. italica v2.2
Defline:  (1 of 1) PTHR10169:SF48 - DNA GYRASE SUBUNIT A, CHLOROPLASTIC/MITOCHONDRIAL-RELATED Genomic Order:  404
Name:  ? Seita.9G040400 Secondary Identifier:  ? PAC:32692928
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G040400 0.5kb upstream 0.5kb upstream 12197 true scaffold_9: 2260779-2272975 Setaria italica
Seita.9G040400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2260779-2261278 Setaria italica
Seita.9G040400 0.5kb downstream 0.5kb downstream 12197 true scaffold_9: 2261279-2273475 Setaria italica
Seita.9G040400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2272976-2273475 Setaria italica
Seita.9G040400 1.0kb upstream 1.0kb upstream 12697 true scaffold_9: 2260279-2272975 Setaria italica
Seita.9G040400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2260279-2261278 Setaria italica
Seita.9G040400 1.0kb downstream 1.0kb downstream 12697 true scaffold_9: 2261279-2273975 Setaria italica
Seita.9G040400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2272976-2273975 Setaria italica
Seita.9G040400 2.0kb upstream 2.0kb upstream 13697 true scaffold_9: 2259279-2272975 Setaria italica
Seita.9G040400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2259279-2261278 Setaria italica
Seita.9G040400 2.0kb downstream 2.0kb downstream 13697 true scaffold_9: 2261279-2274975 Setaria italica
Seita.9G040400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2272976-2274975 Setaria italica
Seita.9G040400 5.0kb upstream 5.0kb upstream 16697 true scaffold_9: 2256279-2272975 Setaria italica
Seita.9G040400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2256279-2261278 Setaria italica
Seita.9G040400 5.0kb downstream 5.0kb downstream 16697 true scaffold_9: 2261279-2277975 Setaria italica
Seita.9G040400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2272976-2277975 Setaria italica
Seita.9G040400 10.0kb upstream 10.0kb upstream 21697 true scaffold_9: 2251279-2272975 Setaria italica
Seita.9G040400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2251279-2261278 Setaria italica
Seita.9G040400 10.0kb downstream 10.0kb downstream 21697 true scaffold_9: 2261279-2282975 Setaria italica
Seita.9G040400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2272976-2282975 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182047 5267 Panicoideae View MSA
124581260 5269 Grass View MSA
122051067 5273 Angiosperm View MSA
121344648 5274 Embryophyte View MSA
123423766 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.175        
cufflinks 7.195        
cufflinks 1.968        
cufflinks 0.567       Low
cufflinks 1.418       Low
cufflinks 8.769       High
cufflinks 5.409        
cufflinks 6.485        
cufflinks 10.448       High
cufflinks 3.127        
cufflinks 4.629        
cufflinks 2.81        
cufflinks 2.206        
cufflinks 4.753        
cufflinks 4.123        
cufflinks 4.087        
cufflinks 4.231        
cufflinks 3.521        
cufflinks 0.648       Low
cufflinks 4.018        

0 Strain