Gene : Seita.9G045700 S. italica v2.2
Defline:  (1 of 1) PTHR23151:SF56 - DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 1 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL Genomic Order:  457
Name:  ? Seita.9G045700 Secondary Identifier:  ? PAC:32688958
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5173 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PYRUVDEHYD-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G045700 0.5kb upstream 0.5kb upstream 7009 true scaffold_9: 2608055-2615063 Setaria italica
Seita.9G045700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2608055-2608554 Setaria italica
Seita.9G045700 0.5kb downstream 0.5kb downstream 7009 true scaffold_9: 2608555-2615563 Setaria italica
Seita.9G045700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2615064-2615563 Setaria italica
Seita.9G045700 1.0kb upstream 1.0kb upstream 7509 true scaffold_9: 2607555-2615063 Setaria italica
Seita.9G045700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2607555-2608554 Setaria italica
Seita.9G045700 1.0kb downstream 1.0kb downstream 7509 true scaffold_9: 2608555-2616063 Setaria italica
Seita.9G045700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2615064-2616063 Setaria italica
Seita.9G045700 2.0kb upstream 2.0kb upstream 8509 true scaffold_9: 2606555-2615063 Setaria italica
Seita.9G045700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2606555-2608554 Setaria italica
Seita.9G045700 2.0kb downstream 2.0kb downstream 8509 true scaffold_9: 2608555-2617063 Setaria italica
Seita.9G045700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2615064-2617063 Setaria italica
Seita.9G045700 5.0kb upstream 5.0kb upstream 11509 true scaffold_9: 2603555-2615063 Setaria italica
Seita.9G045700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2603555-2608554 Setaria italica
Seita.9G045700 5.0kb downstream 5.0kb downstream 11509 true scaffold_9: 2608555-2620063 Setaria italica
Seita.9G045700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2615064-2620063 Setaria italica
Seita.9G045700 10.0kb upstream 10.0kb upstream 16509 true scaffold_9: 2598555-2615063 Setaria italica
Seita.9G045700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2598555-2608554 Setaria italica
Seita.9G045700 10.0kb downstream 10.0kb downstream 16509 true scaffold_9: 2608555-2625063 Setaria italica
Seita.9G045700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2615064-2625063 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040991 5273 Angiosperm View MSA
122186639 5267 Panicoideae View MSA
124588694 5269 Grass View MSA
121346587 5274 Embryophyte View MSA
123426306 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.334        
cufflinks 6.433        
cufflinks 3.282       Low
cufflinks 3.028       Low
cufflinks 3.934       Low
cufflinks 6.564        
cufflinks 5.278        
cufflinks 8.143        
cufflinks 6.759        
cufflinks 7.131        
cufflinks 8.357        
cufflinks 10.662       High
cufflinks 9.471        
cufflinks 3.805       Low
cufflinks 11.976       High
cufflinks 4.266        
cufflinks 16.912     High High
cufflinks 4.834        
cufflinks 3.693       Low
cufflinks 11.452       High

0 Strain