Gene : Seita.9G133200 S. italica v2.2
Defline:  (1 of 2) PTHR12418:SF33 - 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 Genomic Order:  1331
Name:  ? Seita.9G133200 Secondary Identifier:  ? PAC:32690050
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5837 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G133200 0.5kb upstream 0.5kb upstream 7171 true scaffold_9: 8366500-8373670 Setaria italica
Seita.9G133200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 8366500-8366999 Setaria italica
Seita.9G133200 0.5kb downstream 0.5kb downstream 7171 true scaffold_9: 8367000-8374170 Setaria italica
Seita.9G133200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 8373671-8374170 Setaria italica
Seita.9G133200 1.0kb upstream 1.0kb upstream 7671 true scaffold_9: 8366000-8373670 Setaria italica
Seita.9G133200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 8366000-8366999 Setaria italica
Seita.9G133200 1.0kb downstream 1.0kb downstream 7671 true scaffold_9: 8367000-8374670 Setaria italica
Seita.9G133200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 8373671-8374670 Setaria italica
Seita.9G133200 2.0kb upstream 2.0kb upstream 8671 true scaffold_9: 8365000-8373670 Setaria italica
Seita.9G133200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 8365000-8366999 Setaria italica
Seita.9G133200 2.0kb downstream 2.0kb downstream 8671 true scaffold_9: 8367000-8375670 Setaria italica
Seita.9G133200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 8373671-8375670 Setaria italica
Seita.9G133200 5.0kb upstream 5.0kb upstream 11671 true scaffold_9: 8362000-8373670 Setaria italica
Seita.9G133200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 8362000-8366999 Setaria italica
Seita.9G133200 5.0kb downstream 5.0kb downstream 11671 true scaffold_9: 8367000-8378670 Setaria italica
Seita.9G133200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 8373671-8378670 Setaria italica
Seita.9G133200 10.0kb upstream 10.0kb upstream 16671 true scaffold_9: 8357000-8373670 Setaria italica
Seita.9G133200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 8357000-8366999 Setaria italica
Seita.9G133200 10.0kb downstream 10.0kb downstream 16671 true scaffold_9: 8367000-8383670 Setaria italica
Seita.9G133200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 8373671-8383670 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199005 5267 Panicoideae View MSA
124584994 5269 Grass View MSA
122042191 5273 Angiosperm View MSA
121348407 5274 Embryophyte View MSA
123380851 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.513        
cufflinks 0.403        
cufflinks 0.068     Low Low
cufflinks 0.138       Low
cufflinks 0.285        
cufflinks 0.541        
cufflinks 0.335        
cufflinks 0.56        
cufflinks 0.551        
cufflinks 1.454       High
cufflinks 0.609        
cufflinks 0.517        
cufflinks 0.631        
cufflinks 0.321        
cufflinks 0.739        
cufflinks 0.112       Low
cufflinks 0.569        
cufflinks 0.095       Low
cufflinks 0.192        
cufflinks 0.747        

0 Strain