Gene : Seita.9G150100 S. italica v2.2
Defline:  (1 of 4) PTHR10126 - TATA-BOX BINDING PROTEIN Genomic Order:  1501
Name:  ? Seita.9G150100 Secondary Identifier:  ? PAC:32687834
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G150100 0.5kb upstream 0.5kb upstream 4744 true scaffold_9: 9770492-9775235 Setaria italica
Seita.9G150100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 9774736-9775235 Setaria italica
Seita.9G150100 0.5kb downstream 0.5kb downstream 4744 true scaffold_9: 9769992-9774735 Setaria italica
Seita.9G150100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 9769992-9770491 Setaria italica
Seita.9G150100 1.0kb upstream 1.0kb upstream 5244 true scaffold_9: 9770492-9775735 Setaria italica
Seita.9G150100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 9774736-9775735 Setaria italica
Seita.9G150100 1.0kb downstream 1.0kb downstream 5244 true scaffold_9: 9769492-9774735 Setaria italica
Seita.9G150100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 9769492-9770491 Setaria italica
Seita.9G150100 2.0kb upstream 2.0kb upstream 6244 true scaffold_9: 9770492-9776735 Setaria italica
Seita.9G150100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 9774736-9776735 Setaria italica
Seita.9G150100 2.0kb downstream 2.0kb downstream 6244 true scaffold_9: 9768492-9774735 Setaria italica
Seita.9G150100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 9768492-9770491 Setaria italica
Seita.9G150100 5.0kb upstream 5.0kb upstream 9244 true scaffold_9: 9770492-9779735 Setaria italica
Seita.9G150100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 9774736-9779735 Setaria italica
Seita.9G150100 5.0kb downstream 5.0kb downstream 9244 true scaffold_9: 9765492-9774735 Setaria italica
Seita.9G150100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 9765492-9770491 Setaria italica
Seita.9G150100 10.0kb upstream 10.0kb upstream 14244 true scaffold_9: 9770492-9784735 Setaria italica
Seita.9G150100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 9774736-9784735 Setaria italica
Seita.9G150100 10.0kb downstream 10.0kb downstream 14244 true scaffold_9: 9760492-9774735 Setaria italica
Seita.9G150100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 9760492-9770491 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199665 5267 Panicoideae View MSA
124569114 5269 Grass View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.327        
cufflinks 9.763        
cufflinks 9.233        
cufflinks 8.297        
cufflinks 7.529       Low
cufflinks 11.093        
cufflinks 9.069        
cufflinks 14.804     High High
cufflinks 7.435       Low
cufflinks 11.526        
cufflinks 7.641       Low
cufflinks 10.772        
cufflinks 7.682       Low
cufflinks 10.564        
cufflinks 9.89        
cufflinks 10.725        
cufflinks 12.525       High
cufflinks 9.21        
cufflinks 8.484        
cufflinks 10.376        

0 Strain