Gene : Seita.9G108100 S. italica v2.2
Defline:  (1 of 1) PTHR31412:SF2 - ZINC METALLOPEPTIDASE EGY3, CHLOROPLASTIC-RELATED Genomic Order:  1081
Name:  ? Seita.9G108100 Secondary Identifier:  ? PAC:32692443
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G108100 0.5kb upstream 0.5kb upstream 3273 true scaffold_9: 6556126-6559398 Setaria italica
Seita.9G108100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6556126-6556625 Setaria italica
Seita.9G108100 0.5kb downstream 0.5kb downstream 3273 true scaffold_9: 6556626-6559898 Setaria italica
Seita.9G108100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6559399-6559898 Setaria italica
Seita.9G108100 1.0kb upstream 1.0kb upstream 3773 true scaffold_9: 6555626-6559398 Setaria italica
Seita.9G108100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6555626-6556625 Setaria italica
Seita.9G108100 1.0kb downstream 1.0kb downstream 3773 true scaffold_9: 6556626-6560398 Setaria italica
Seita.9G108100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6559399-6560398 Setaria italica
Seita.9G108100 2.0kb upstream 2.0kb upstream 4773 true scaffold_9: 6554626-6559398 Setaria italica
Seita.9G108100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6554626-6556625 Setaria italica
Seita.9G108100 2.0kb downstream 2.0kb downstream 4773 true scaffold_9: 6556626-6561398 Setaria italica
Seita.9G108100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6559399-6561398 Setaria italica
Seita.9G108100 5.0kb upstream 5.0kb upstream 7773 true scaffold_9: 6551626-6559398 Setaria italica
Seita.9G108100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6551626-6556625 Setaria italica
Seita.9G108100 5.0kb downstream 5.0kb downstream 7773 true scaffold_9: 6556626-6564398 Setaria italica
Seita.9G108100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6559399-6564398 Setaria italica
Seita.9G108100 10.0kb upstream 10.0kb upstream 12773 true scaffold_9: 6546626-6559398 Setaria italica
Seita.9G108100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6546626-6556625 Setaria italica
Seita.9G108100 10.0kb downstream 10.0kb downstream 12773 true scaffold_9: 6556626-6569398 Setaria italica
Seita.9G108100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6559399-6569398 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179923 5267 Panicoideae View MSA
124579844 5269 Grass View MSA
122042498 5273 Angiosperm View MSA
121347143 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.759        
cufflinks 1.021        
cufflinks 6.261        
cufflinks 15.554     High High
cufflinks 4.71        
cufflinks 0.678        
cufflinks 1.983        
cufflinks 1.147        
cufflinks 0.667        
cufflinks 0.453        
cufflinks 0.406        
cufflinks 0.212        
cufflinks 0.241        
cufflinks 4.56        
cufflinks 0.125       Low
cufflinks 8.153       High
cufflinks 0.067     Low Low
cufflinks 15.596     High High
cufflinks 33.566     High High
cufflinks 0.129     Low Low

0 Strain