Gene : Seita.9G109400 S. italica v2.2
Genomic Order:  1094 Name:  ? Seita.9G109400
Secondary Identifier:  ? PAC:32689899
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G109400 0.5kb upstream 0.5kb upstream 3162 true scaffold_9: 6655321-6658482 Setaria italica
Seita.9G109400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6657983-6658482 Setaria italica
Seita.9G109400 0.5kb downstream 0.5kb downstream 3162 true scaffold_9: 6654821-6657982 Setaria italica
Seita.9G109400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6654821-6655320 Setaria italica
Seita.9G109400 1.0kb upstream 1.0kb upstream 3662 true scaffold_9: 6655321-6658982 Setaria italica
Seita.9G109400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6657983-6658982 Setaria italica
Seita.9G109400 1.0kb downstream 1.0kb downstream 3662 true scaffold_9: 6654321-6657982 Setaria italica
Seita.9G109400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6654321-6655320 Setaria italica
Seita.9G109400 2.0kb upstream 2.0kb upstream 4662 true scaffold_9: 6655321-6659982 Setaria italica
Seita.9G109400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6657983-6659982 Setaria italica
Seita.9G109400 2.0kb downstream 2.0kb downstream 4662 true scaffold_9: 6653321-6657982 Setaria italica
Seita.9G109400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6653321-6655320 Setaria italica
Seita.9G109400 5.0kb upstream 5.0kb upstream 7662 true scaffold_9: 6655321-6662982 Setaria italica
Seita.9G109400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6657983-6662982 Setaria italica
Seita.9G109400 5.0kb downstream 5.0kb downstream 7662 true scaffold_9: 6650321-6657982 Setaria italica
Seita.9G109400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6650321-6655320 Setaria italica
Seita.9G109400 10.0kb upstream 10.0kb upstream 12662 true scaffold_9: 6655321-6667982 Setaria italica
Seita.9G109400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6657983-6667982 Setaria italica
Seita.9G109400 10.0kb downstream 10.0kb downstream 12662 true scaffold_9: 6645321-6657982 Setaria italica
Seita.9G109400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6645321-6655320 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177409 5267 Panicoideae View MSA
124576599 5269 Grass View MSA
122050680 5273 Angiosperm View MSA
121346706 5274 Embryophyte View MSA
123380432 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.692        
cufflinks 2.807       High
cufflinks 1.175       Low
cufflinks 1.366        
cufflinks 1.351        
cufflinks 2.848       High
cufflinks 1.553        
cufflinks 2.399        
cufflinks 1.385        
cufflinks 4.218       High
cufflinks 1.539        
cufflinks 2.77        
cufflinks 2.306        
cufflinks 1.717        
cufflinks 2.3        
cufflinks 1.456        
cufflinks 3.073       High
cufflinks 1.347        
cufflinks 1.318       Low
cufflinks 2.658        

0 Strain