Gene : Seita.9G109600 S. italica v2.2
Defline:  (1 of 1) PTHR13206 - UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN Genomic Order:  1096
Name:  ? Seita.9G109600 Secondary Identifier:  ? PAC:32690174
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G109600 0.5kb upstream 0.5kb upstream 3394 true scaffold_9: 6687161-6690554 Setaria italica
Seita.9G109600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6687161-6687660 Setaria italica
Seita.9G109600 0.5kb downstream 0.5kb downstream 3394 true scaffold_9: 6687661-6691054 Setaria italica
Seita.9G109600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6690555-6691054 Setaria italica
Seita.9G109600 1.0kb upstream 1.0kb upstream 3894 true scaffold_9: 6686661-6690554 Setaria italica
Seita.9G109600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6686661-6687660 Setaria italica
Seita.9G109600 1.0kb downstream 1.0kb downstream 3894 true scaffold_9: 6687661-6691554 Setaria italica
Seita.9G109600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6690555-6691554 Setaria italica
Seita.9G109600 2.0kb upstream 2.0kb upstream 4894 true scaffold_9: 6685661-6690554 Setaria italica
Seita.9G109600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6685661-6687660 Setaria italica
Seita.9G109600 2.0kb downstream 2.0kb downstream 4894 true scaffold_9: 6687661-6692554 Setaria italica
Seita.9G109600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6690555-6692554 Setaria italica
Seita.9G109600 5.0kb upstream 5.0kb upstream 7894 true scaffold_9: 6682661-6690554 Setaria italica
Seita.9G109600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6682661-6687660 Setaria italica
Seita.9G109600 5.0kb downstream 5.0kb downstream 7894 true scaffold_9: 6687661-6695554 Setaria italica
Seita.9G109600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6690555-6695554 Setaria italica
Seita.9G109600 10.0kb upstream 10.0kb upstream 12894 true scaffold_9: 6677661-6690554 Setaria italica
Seita.9G109600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6677661-6687660 Setaria italica
Seita.9G109600 10.0kb downstream 10.0kb downstream 12894 true scaffold_9: 6687661-6700554 Setaria italica
Seita.9G109600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6690555-6700554 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040943 5273 Angiosperm View MSA
122186698 5267 Panicoideae View MSA
124579661 5269 Grass View MSA
121344260 5274 Embryophyte View MSA
123423854 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.223        
cufflinks 1.426        
cufflinks 0.402        
cufflinks 0.105       Low
cufflinks 0.158       Low
cufflinks 1.332        
cufflinks 0.63        
cufflinks 0.752        
cufflinks 0.621        
cufflinks 1.389        
cufflinks 1.19        
cufflinks 0.965        
cufflinks 0.39        
cufflinks 1.226        
cufflinks 0.923        
cufflinks 0.733        
cufflinks 1.253        
cufflinks 0.579        
cufflinks 0.056     Low Low
cufflinks 1.057        

0 Strain