Gene : Seita.9G113600 S. italica v2.2
Defline:  (1 of 2) PTHR24423:SF519 - PHYTOCHROME A Genomic Order:  1136
Name:  ? Seita.9G113600 Secondary Identifier:  ? PAC:32687185
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G113600 0.5kb upstream 0.5kb upstream 8376 true scaffold_9: 7030073-7038448 Setaria italica
Seita.9G113600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 7030073-7030572 Setaria italica
Seita.9G113600 0.5kb downstream 0.5kb downstream 8376 true scaffold_9: 7030573-7038948 Setaria italica
Seita.9G113600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7038449-7038948 Setaria italica
Seita.9G113600 1.0kb upstream 1.0kb upstream 8876 true scaffold_9: 7029573-7038448 Setaria italica
Seita.9G113600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 7029573-7030572 Setaria italica
Seita.9G113600 1.0kb downstream 1.0kb downstream 8876 true scaffold_9: 7030573-7039448 Setaria italica
Seita.9G113600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7038449-7039448 Setaria italica
Seita.9G113600 2.0kb upstream 2.0kb upstream 9876 true scaffold_9: 7028573-7038448 Setaria italica
Seita.9G113600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 7028573-7030572 Setaria italica
Seita.9G113600 2.0kb downstream 2.0kb downstream 9876 true scaffold_9: 7030573-7040448 Setaria italica
Seita.9G113600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7038449-7040448 Setaria italica
Seita.9G113600 5.0kb upstream 5.0kb upstream 12876 true scaffold_9: 7025573-7038448 Setaria italica
Seita.9G113600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 7025573-7030572 Setaria italica
Seita.9G113600 5.0kb downstream 5.0kb downstream 12876 true scaffold_9: 7030573-7043448 Setaria italica
Seita.9G113600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7038449-7043448 Setaria italica
Seita.9G113600 10.0kb upstream 10.0kb upstream 17876 true scaffold_9: 7020573-7038448 Setaria italica
Seita.9G113600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 7020573-7030572 Setaria italica
Seita.9G113600 10.0kb downstream 10.0kb downstream 17876 true scaffold_9: 7030573-7048448 Setaria italica
Seita.9G113600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7038449-7048448 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195645 5267 Panicoideae View MSA
124571484 5269 Grass View MSA
122046553 5273 Angiosperm View MSA
121310619 5274 Embryophyte View MSA
123348057 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 955.805     High High
cufflinks 10.119       Low
cufflinks 31.378     High  
cufflinks 43.076     High  
cufflinks 54.152     High  
cufflinks 15.383     High  
cufflinks 26.821     High  
cufflinks 13.353        
cufflinks 37.445     High  
cufflinks 228.143     High High
cufflinks 671.434     High High
cufflinks 34.637     High  
cufflinks 40.527     High  
cufflinks 9.876       Low
cufflinks 25.332     High  
cufflinks 104.646     High  
cufflinks 27.341     High  
cufflinks 187.573     High High
cufflinks 18.463     High  
cufflinks 34.729     High  

0 Strain