Gene : Seita.9G121900 S. italica v2.2
Defline:  (1 of 1) PTHR10516:SF308 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP17-2, CHLOROPLASTIC-RELATED Genomic Order:  1219
Name:  ? Seita.9G121900 Secondary Identifier:  ? PAC:32689516
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G121900 0.5kb upstream 0.5kb upstream 2066 true scaffold_9: 7548578-7550643 Setaria italica
Seita.9G121900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 7548578-7549077 Setaria italica
Seita.9G121900 0.5kb downstream 0.5kb downstream 2066 true scaffold_9: 7549078-7551143 Setaria italica
Seita.9G121900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7550644-7551143 Setaria italica
Seita.9G121900 1.0kb upstream 1.0kb upstream 2566 true scaffold_9: 7548078-7550643 Setaria italica
Seita.9G121900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 7548078-7549077 Setaria italica
Seita.9G121900 1.0kb downstream 1.0kb downstream 2566 true scaffold_9: 7549078-7551643 Setaria italica
Seita.9G121900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7550644-7551643 Setaria italica
Seita.9G121900 2.0kb upstream 2.0kb upstream 3566 true scaffold_9: 7547078-7550643 Setaria italica
Seita.9G121900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 7547078-7549077 Setaria italica
Seita.9G121900 2.0kb downstream 2.0kb downstream 3566 true scaffold_9: 7549078-7552643 Setaria italica
Seita.9G121900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7550644-7552643 Setaria italica
Seita.9G121900 5.0kb upstream 5.0kb upstream 6566 true scaffold_9: 7544078-7550643 Setaria italica
Seita.9G121900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 7544078-7549077 Setaria italica
Seita.9G121900 5.0kb downstream 5.0kb downstream 6566 true scaffold_9: 7549078-7555643 Setaria italica
Seita.9G121900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7550644-7555643 Setaria italica
Seita.9G121900 10.0kb upstream 10.0kb upstream 11566 true scaffold_9: 7539078-7550643 Setaria italica
Seita.9G121900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 7539078-7549077 Setaria italica
Seita.9G121900 10.0kb downstream 10.0kb downstream 11566 true scaffold_9: 7549078-7560643 Setaria italica
Seita.9G121900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7550644-7560643 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041293 5273 Angiosperm View MSA
122183611 5267 Panicoideae View MSA
124578287 5269 Grass View MSA
121344596 5274 Embryophyte View MSA
123424769 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.869        
cufflinks 4.987        
cufflinks 16.768     High  
cufflinks 43.093     High High
cufflinks 34.365     High High
cufflinks 5.138        
cufflinks 17.512     High  
cufflinks 23.437     High  
cufflinks 25.788     High  
cufflinks 4.257        
cufflinks 1.257        
cufflinks 0.021     Low Low
cufflinks 0.17     Low Low
cufflinks 25.587     High  
cufflinks 0.017     Low Low
cufflinks 11.496        
cufflinks 0.047     Low Low
cufflinks 2.782        
cufflinks 5.549        
cufflinks 0.075     Low Low

0 Strain