Gene : Seita.9G126400 S. italica v2.2
Defline:  (1 of 1) PTHR24423//PTHR24423:SF515 - TWO-COMPONENT SENSOR HISTIDINE KINASE Genomic Order:  1264
Name:  ? Seita.9G126400 Secondary Identifier:  ? PAC:32692779
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G126400 0.5kb upstream 0.5kb upstream 5825 true scaffold_9: 7886719-7892543 Setaria italica
Seita.9G126400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 7886719-7887218 Setaria italica
Seita.9G126400 0.5kb downstream 0.5kb downstream 5825 true scaffold_9: 7887219-7893043 Setaria italica
Seita.9G126400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7892544-7893043 Setaria italica
Seita.9G126400 1.0kb upstream 1.0kb upstream 6325 true scaffold_9: 7886219-7892543 Setaria italica
Seita.9G126400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 7886219-7887218 Setaria italica
Seita.9G126400 1.0kb downstream 1.0kb downstream 6325 true scaffold_9: 7887219-7893543 Setaria italica
Seita.9G126400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7892544-7893543 Setaria italica
Seita.9G126400 2.0kb upstream 2.0kb upstream 7325 true scaffold_9: 7885219-7892543 Setaria italica
Seita.9G126400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 7885219-7887218 Setaria italica
Seita.9G126400 2.0kb downstream 2.0kb downstream 7325 true scaffold_9: 7887219-7894543 Setaria italica
Seita.9G126400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7892544-7894543 Setaria italica
Seita.9G126400 5.0kb upstream 5.0kb upstream 10325 true scaffold_9: 7882219-7892543 Setaria italica
Seita.9G126400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 7882219-7887218 Setaria italica
Seita.9G126400 5.0kb downstream 5.0kb downstream 10325 true scaffold_9: 7887219-7897543 Setaria italica
Seita.9G126400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7892544-7897543 Setaria italica
Seita.9G126400 10.0kb upstream 10.0kb upstream 15325 true scaffold_9: 7877219-7892543 Setaria italica
Seita.9G126400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 7877219-7887218 Setaria italica
Seita.9G126400 10.0kb downstream 10.0kb downstream 15325 true scaffold_9: 7887219-7902543 Setaria italica
Seita.9G126400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7892544-7902543 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178568 5267 Panicoideae View MSA
124588013 5269 Grass View MSA
122046437 5273 Angiosperm View MSA
123429048 5275 Viridiplantae View MSA
121350993 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.212     High High
cufflinks 21.377     High  
cufflinks 16.489     High  
cufflinks 15.017     High  
cufflinks 13.774     High Low
cufflinks 22.275     High High
cufflinks 16.786     High  
cufflinks 11.75       Low
cufflinks 12.502     High Low
cufflinks 15.498        
cufflinks 21.406     High  
cufflinks 19.394     High  
cufflinks 22.803     High High
cufflinks 15.777     High  
cufflinks 23.468     High High
cufflinks 16.393     High  
cufflinks 19.891     High  
cufflinks 17.367     High  
cufflinks 14.364     High  
cufflinks 19.222     High  

0 Strain