Gene : Seita.9G127700 S. italica v2.2
Defline:  (1 of 4) PTHR11771:SF53 - LINOLEATE 9S-LIPOXYGENASE 5, CHLOROPLASTIC Genomic Order:  1277
Name:  ? Seita.9G127700 Secondary Identifier:  ? PAC:32690325
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G127700 0.5kb upstream 0.5kb upstream 6509 true scaffold_9: 7994348-8000856 Setaria italica
Seita.9G127700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 8000357-8000856 Setaria italica
Seita.9G127700 0.5kb downstream 0.5kb downstream 6509 true scaffold_9: 7993848-8000356 Setaria italica
Seita.9G127700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7993848-7994347 Setaria italica
Seita.9G127700 1.0kb upstream 1.0kb upstream 7009 true scaffold_9: 7994348-8001356 Setaria italica
Seita.9G127700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 8000357-8001356 Setaria italica
Seita.9G127700 1.0kb downstream 1.0kb downstream 7009 true scaffold_9: 7993348-8000356 Setaria italica
Seita.9G127700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7993348-7994347 Setaria italica
Seita.9G127700 2.0kb upstream 2.0kb upstream 8009 true scaffold_9: 7994348-8002356 Setaria italica
Seita.9G127700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 8000357-8002356 Setaria italica
Seita.9G127700 2.0kb downstream 2.0kb downstream 8009 true scaffold_9: 7992348-8000356 Setaria italica
Seita.9G127700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7992348-7994347 Setaria italica
Seita.9G127700 5.0kb upstream 5.0kb upstream 11009 true scaffold_9: 7994348-8005356 Setaria italica
Seita.9G127700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 8000357-8005356 Setaria italica
Seita.9G127700 5.0kb downstream 5.0kb downstream 11009 true scaffold_9: 7989348-8000356 Setaria italica
Seita.9G127700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7989348-7994347 Setaria italica
Seita.9G127700 10.0kb upstream 10.0kb upstream 16009 true scaffold_9: 7994348-8010356 Setaria italica
Seita.9G127700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 8000357-8010356 Setaria italica
Seita.9G127700 10.0kb downstream 10.0kb downstream 16009 true scaffold_9: 7984348-8000356 Setaria italica
Seita.9G127700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7984348-7994347 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180259 5267 Panicoideae View MSA
124580816 5269 Grass View MSA
122049504 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.76     High  
cufflinks 87.099     High High
cufflinks 2.286       Low
cufflinks 8.76       Low
cufflinks 23.342     High  
cufflinks 76.399     High High
cufflinks 35.584     High  
cufflinks 35.467     High  
cufflinks 51.012     High  
cufflinks 35.082     High  
cufflinks 50.455     High  
cufflinks 39.223     High  
cufflinks 24.799     High  
cufflinks 18.678     High  
cufflinks 40.789     High  
cufflinks 10.056       Low
cufflinks 38.526     High  
cufflinks 15.003     High  
cufflinks 10.597       Low
cufflinks 53.556     High  

0 Strain