Gene : Seita.9G216300 S. italica v2.2
Defline:  (1 of 2) PTHR31998:SF11 - PYROPHOSPHATE-ENERGIZED MEMBRANE PROTON PUMP 2-RELATED Genomic Order:  2163
Name:  ? Seita.9G216300 Secondary Identifier:  ? PAC:32691104
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G216300 0.5kb upstream 0.5kb upstream 11904 true scaffold_9: 15770197-15782100 Setaria italica
Seita.9G216300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 15781601-15782100 Setaria italica
Seita.9G216300 0.5kb downstream 0.5kb downstream 11904 true scaffold_9: 15769697-15781600 Setaria italica
Seita.9G216300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 15769697-15770196 Setaria italica
Seita.9G216300 1.0kb upstream 1.0kb upstream 12404 true scaffold_9: 15770197-15782600 Setaria italica
Seita.9G216300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 15781601-15782600 Setaria italica
Seita.9G216300 1.0kb downstream 1.0kb downstream 12404 true scaffold_9: 15769197-15781600 Setaria italica
Seita.9G216300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 15769197-15770196 Setaria italica
Seita.9G216300 2.0kb upstream 2.0kb upstream 13404 true scaffold_9: 15770197-15783600 Setaria italica
Seita.9G216300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 15781601-15783600 Setaria italica
Seita.9G216300 2.0kb downstream 2.0kb downstream 13404 true scaffold_9: 15768197-15781600 Setaria italica
Seita.9G216300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 15768197-15770196 Setaria italica
Seita.9G216300 5.0kb upstream 5.0kb upstream 16404 true scaffold_9: 15770197-15786600 Setaria italica
Seita.9G216300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 15781601-15786600 Setaria italica
Seita.9G216300 5.0kb downstream 5.0kb downstream 16404 true scaffold_9: 15765197-15781600 Setaria italica
Seita.9G216300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 15765197-15770196 Setaria italica
Seita.9G216300 10.0kb upstream 10.0kb upstream 21404 true scaffold_9: 15770197-15791600 Setaria italica
Seita.9G216300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 15781601-15791600 Setaria italica
Seita.9G216300 10.0kb downstream 10.0kb downstream 21404 true scaffold_9: 15760197-15781600 Setaria italica
Seita.9G216300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 15760197-15770196 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198953 5267 Panicoideae View MSA
124583219 5269 Grass View MSA
122044345 5273 Angiosperm View MSA
121350028 5274 Embryophyte View MSA
123424450 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.203       High
cufflinks 6.72       High
cufflinks 3.113       Low
cufflinks 2.528       Low
cufflinks 3.034       Low
cufflinks 5.549        
cufflinks 5.101        
cufflinks 4.006        
cufflinks 4.548        
cufflinks 3.851        
cufflinks 5.684       High
cufflinks 4.151        
cufflinks 3.815        
cufflinks 3.962        
cufflinks 6.176       High
cufflinks 3.956        
cufflinks 4.516        
cufflinks 3.024       Low
cufflinks 2.61       Low
cufflinks 4.943        

0 Strain