Gene : Seita.9G223200 S. italica v2.2
Defline:  (1 of 1) PTHR12596:SF1 - EXPORTIN-4 Genomic Order:  2232
Name:  ? Seita.9G223200 Secondary Identifier:  ? PAC:32693317
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G223200 0.5kb upstream 0.5kb upstream 15040 true scaffold_9: 16655128-16670167 Setaria italica
Seita.9G223200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 16669668-16670167 Setaria italica
Seita.9G223200 0.5kb downstream 0.5kb downstream 15040 true scaffold_9: 16654628-16669667 Setaria italica
Seita.9G223200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 16654628-16655127 Setaria italica
Seita.9G223200 1.0kb upstream 1.0kb upstream 15540 true scaffold_9: 16655128-16670667 Setaria italica
Seita.9G223200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 16669668-16670667 Setaria italica
Seita.9G223200 1.0kb downstream 1.0kb downstream 15540 true scaffold_9: 16654128-16669667 Setaria italica
Seita.9G223200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 16654128-16655127 Setaria italica
Seita.9G223200 2.0kb upstream 2.0kb upstream 16540 true scaffold_9: 16655128-16671667 Setaria italica
Seita.9G223200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 16669668-16671667 Setaria italica
Seita.9G223200 2.0kb downstream 2.0kb downstream 16540 true scaffold_9: 16653128-16669667 Setaria italica
Seita.9G223200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 16653128-16655127 Setaria italica
Seita.9G223200 5.0kb upstream 5.0kb upstream 19540 true scaffold_9: 16655128-16674667 Setaria italica
Seita.9G223200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 16669668-16674667 Setaria italica
Seita.9G223200 5.0kb downstream 5.0kb downstream 19540 true scaffold_9: 16650128-16669667 Setaria italica
Seita.9G223200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 16650128-16655127 Setaria italica
Seita.9G223200 10.0kb upstream 10.0kb upstream 24540 true scaffold_9: 16655128-16679667 Setaria italica
Seita.9G223200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 16669668-16679667 Setaria italica
Seita.9G223200 10.0kb downstream 10.0kb downstream 24540 true scaffold_9: 16645128-16669667 Setaria italica
Seita.9G223200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 16645128-16655127 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041048 5273 Angiosperm View MSA
122179340 5267 Panicoideae View MSA
124584460 5269 Grass View MSA
121344332 5274 Embryophyte View MSA
123425347 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.43       High
cufflinks 5.351        
cufflinks 6.946        
cufflinks 5.016        
cufflinks 4.094       Low
cufflinks 5.236        
cufflinks 6.227        
cufflinks 4.732        
cufflinks 4.363       Low
cufflinks 4.142       Low
cufflinks 7.337       High
cufflinks 5.091        
cufflinks 6.406        
cufflinks 5.924        
cufflinks 6.229        
cufflinks 8.084       High
cufflinks 4.774        
cufflinks 8.18       High
cufflinks 4.776        
cufflinks 5.302        

0 Strain