Gene : Seita.9G171500 S. italica v2.2
Defline:  (1 of 1) PTHR19878:SF4 - TRANSDUCIN/WD40 DOMAIN-CONTAINING PROTEIN Genomic Order:  1715
Name:  ? Seita.9G171500 Secondary Identifier:  ? PAC:32688685
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G171500 0.5kb upstream 0.5kb upstream 11580 true scaffold_9: 11654063-11665642 Setaria italica
Seita.9G171500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 11654063-11654562 Setaria italica
Seita.9G171500 0.5kb downstream 0.5kb downstream 11580 true scaffold_9: 11654563-11666142 Setaria italica
Seita.9G171500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 11665643-11666142 Setaria italica
Seita.9G171500 1.0kb upstream 1.0kb upstream 12080 true scaffold_9: 11653563-11665642 Setaria italica
Seita.9G171500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 11653563-11654562 Setaria italica
Seita.9G171500 1.0kb downstream 1.0kb downstream 12080 true scaffold_9: 11654563-11666642 Setaria italica
Seita.9G171500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 11665643-11666642 Setaria italica
Seita.9G171500 2.0kb upstream 2.0kb upstream 13080 true scaffold_9: 11652563-11665642 Setaria italica
Seita.9G171500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 11652563-11654562 Setaria italica
Seita.9G171500 2.0kb downstream 2.0kb downstream 13080 true scaffold_9: 11654563-11667642 Setaria italica
Seita.9G171500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 11665643-11667642 Setaria italica
Seita.9G171500 5.0kb upstream 5.0kb upstream 16080 true scaffold_9: 11649563-11665642 Setaria italica
Seita.9G171500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 11649563-11654562 Setaria italica
Seita.9G171500 5.0kb downstream 5.0kb downstream 16080 true scaffold_9: 11654563-11670642 Setaria italica
Seita.9G171500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 11665643-11670642 Setaria italica
Seita.9G171500 10.0kb upstream 10.0kb upstream 21080 true scaffold_9: 11644563-11665642 Setaria italica
Seita.9G171500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 11644563-11654562 Setaria italica
Seita.9G171500 10.0kb downstream 10.0kb downstream 21080 true scaffold_9: 11654563-11675642 Setaria italica
Seita.9G171500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 11665643-11675642 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183549 5267 Panicoideae View MSA
124581296 5269 Grass View MSA
122042112 5273 Angiosperm View MSA
121345827 5274 Embryophyte View MSA
123428290 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.747     High High
cufflinks 32.375     High High
cufflinks 15.019     High  
cufflinks 9.773       Low
cufflinks 9.002       Low
cufflinks 28.371     High  
cufflinks 24.975     High  
cufflinks 14.339     High  
cufflinks 16.464     High  
cufflinks 16.622     High  
cufflinks 37.953     High High
cufflinks 17.207     High  
cufflinks 21.238     High  
cufflinks 15.652     High  
cufflinks 28.622     High  
cufflinks 23.941     High  
cufflinks 16.02     High  
cufflinks 27.07     High  
cufflinks 11.076       Low
cufflinks 21.845     High  

0 Strain