Gene : Seita.9G185600 S. italica v2.2
Defline:  (1 of 453) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1856
Name:  ? Seita.9G185600 Secondary Identifier:  ? PAC:32687415
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G185600 0.5kb upstream 0.5kb upstream 2796 true scaffold_9: 12934303-12937098 Setaria italica
Seita.9G185600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 12934303-12934802 Setaria italica
Seita.9G185600 0.5kb downstream 0.5kb downstream 2796 true scaffold_9: 12934803-12937598 Setaria italica
Seita.9G185600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 12937099-12937598 Setaria italica
Seita.9G185600 1.0kb upstream 1.0kb upstream 3296 true scaffold_9: 12933803-12937098 Setaria italica
Seita.9G185600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 12933803-12934802 Setaria italica
Seita.9G185600 1.0kb downstream 1.0kb downstream 3296 true scaffold_9: 12934803-12938098 Setaria italica
Seita.9G185600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 12937099-12938098 Setaria italica
Seita.9G185600 2.0kb upstream 2.0kb upstream 4296 true scaffold_9: 12932803-12937098 Setaria italica
Seita.9G185600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 12932803-12934802 Setaria italica
Seita.9G185600 2.0kb downstream 2.0kb downstream 4296 true scaffold_9: 12934803-12939098 Setaria italica
Seita.9G185600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 12937099-12939098 Setaria italica
Seita.9G185600 5.0kb upstream 5.0kb upstream 7296 true scaffold_9: 12929803-12937098 Setaria italica
Seita.9G185600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 12929803-12934802 Setaria italica
Seita.9G185600 5.0kb downstream 5.0kb downstream 7296 true scaffold_9: 12934803-12942098 Setaria italica
Seita.9G185600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 12937099-12942098 Setaria italica
Seita.9G185600 10.0kb upstream 10.0kb upstream 12296 true scaffold_9: 12924803-12937098 Setaria italica
Seita.9G185600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 12924803-12934802 Setaria italica
Seita.9G185600 10.0kb downstream 10.0kb downstream 12296 true scaffold_9: 12934803-12947098 Setaria italica
Seita.9G185600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 12937099-12947098 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185374 5267 Panicoideae View MSA
124571343 5269 Grass View MSA
122045784 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.591        
cufflinks 7.419        
cufflinks 2.437        
cufflinks 0.952       Low
cufflinks 7.256        
cufflinks 8.146        
cufflinks 15.588     High High
cufflinks 15.414     High High
cufflinks 32.54     High High
cufflinks 5.073        
cufflinks 9.294        
cufflinks 0.943       Low
cufflinks 0.786       Low
cufflinks 5.103        
cufflinks 1.24       Low
cufflinks 9.361        
cufflinks 1.762        
cufflinks 8.485        
cufflinks 0.688       Low
cufflinks 1.568        

0 Strain