Gene : Seita.9G200800 S. italica v2.2
Defline:  (1 of 2) PTHR12878 - NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNIT Genomic Order:  2008
Name:  ? Seita.9G200800 Secondary Identifier:  ? PAC:32691825
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G200800 0.5kb upstream 0.5kb upstream 3609 true scaffold_9: 14392334-14395942 Setaria italica
Seita.9G200800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 14392334-14392833 Setaria italica
Seita.9G200800 0.5kb downstream 0.5kb downstream 3609 true scaffold_9: 14392834-14396442 Setaria italica
Seita.9G200800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 14395943-14396442 Setaria italica
Seita.9G200800 1.0kb upstream 1.0kb upstream 4109 true scaffold_9: 14391834-14395942 Setaria italica
Seita.9G200800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 14391834-14392833 Setaria italica
Seita.9G200800 1.0kb downstream 1.0kb downstream 4109 true scaffold_9: 14392834-14396942 Setaria italica
Seita.9G200800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 14395943-14396942 Setaria italica
Seita.9G200800 2.0kb upstream 2.0kb upstream 5109 true scaffold_9: 14390834-14395942 Setaria italica
Seita.9G200800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 14390834-14392833 Setaria italica
Seita.9G200800 2.0kb downstream 2.0kb downstream 5109 true scaffold_9: 14392834-14397942 Setaria italica
Seita.9G200800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 14395943-14397942 Setaria italica
Seita.9G200800 5.0kb upstream 5.0kb upstream 8109 true scaffold_9: 14387834-14395942 Setaria italica
Seita.9G200800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 14387834-14392833 Setaria italica
Seita.9G200800 5.0kb downstream 5.0kb downstream 8109 true scaffold_9: 14392834-14400942 Setaria italica
Seita.9G200800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 14395943-14400942 Setaria italica
Seita.9G200800 10.0kb upstream 10.0kb upstream 13109 true scaffold_9: 14382834-14395942 Setaria italica
Seita.9G200800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 14382834-14392833 Setaria italica
Seita.9G200800 10.0kb downstream 10.0kb downstream 13109 true scaffold_9: 14392834-14405942 Setaria italica
Seita.9G200800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 14395943-14405942 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183888 5267 Panicoideae View MSA
124586524 5269 Grass View MSA
122045134 5273 Angiosperm View MSA
121343920 5274 Embryophyte View MSA
123424630 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.731        
cufflinks 10.767        
cufflinks 2.535       Low
cufflinks 2.661       Low
cufflinks 2.251       Low
cufflinks 7.849        
cufflinks 5.637        
cufflinks 10.1        
cufflinks 4.576        
cufflinks 17.19     High High
cufflinks 8.898        
cufflinks 6.206        
cufflinks 11.411       High
cufflinks 5.068        
cufflinks 9.267        
cufflinks 4.841        
cufflinks 10.081        
cufflinks 3.649        
cufflinks 3.689        
cufflinks 10.803        

0 Strain