Gene : Seita.9G291700 S. italica v2.2
Defline:  (1 of 1) PTHR11679:SF3 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 Genomic Order:  2917
Name:  ? Seita.9G291700 Secondary Identifier:  ? PAC:32690264
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G291700 0.5kb upstream 0.5kb upstream 9509 true scaffold_9: 32942109-32951617 Setaria italica
Seita.9G291700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 32951118-32951617 Setaria italica
Seita.9G291700 0.5kb downstream 0.5kb downstream 9509 true scaffold_9: 32941609-32951117 Setaria italica
Seita.9G291700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 32941609-32942108 Setaria italica
Seita.9G291700 1.0kb upstream 1.0kb upstream 10009 true scaffold_9: 32942109-32952117 Setaria italica
Seita.9G291700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 32951118-32952117 Setaria italica
Seita.9G291700 1.0kb downstream 1.0kb downstream 10009 true scaffold_9: 32941109-32951117 Setaria italica
Seita.9G291700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 32941109-32942108 Setaria italica
Seita.9G291700 2.0kb upstream 2.0kb upstream 11009 true scaffold_9: 32942109-32953117 Setaria italica
Seita.9G291700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 32951118-32953117 Setaria italica
Seita.9G291700 2.0kb downstream 2.0kb downstream 11009 true scaffold_9: 32940109-32951117 Setaria italica
Seita.9G291700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 32940109-32942108 Setaria italica
Seita.9G291700 5.0kb upstream 5.0kb upstream 14009 true scaffold_9: 32942109-32956117 Setaria italica
Seita.9G291700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 32951118-32956117 Setaria italica
Seita.9G291700 5.0kb downstream 5.0kb downstream 14009 true scaffold_9: 32937109-32951117 Setaria italica
Seita.9G291700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 32937109-32942108 Setaria italica
Seita.9G291700 10.0kb upstream 10.0kb upstream 19009 true scaffold_9: 32942109-32961117 Setaria italica
Seita.9G291700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 32951118-32961117 Setaria italica
Seita.9G291700 10.0kb downstream 10.0kb downstream 19009 true scaffold_9: 32932109-32951117 Setaria italica
Seita.9G291700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 32932109-32942108 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186231 5267 Panicoideae View MSA
124576173 5269 Grass View MSA
122044775 5273 Angiosperm View MSA
121347331 5274 Embryophyte View MSA
123424934 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.993        
cufflinks 6.215       High
cufflinks 4.369        
cufflinks 3.462       Low
cufflinks 3.226       Low
cufflinks 5.908        
cufflinks 5.124        
cufflinks 4.575        
cufflinks 3.83        
cufflinks 3.559       Low
cufflinks 5.641        
cufflinks 6.099        
cufflinks 4.423        
cufflinks 3.38       Low
cufflinks 6.224       High
cufflinks 5.106        
cufflinks 6.086        
cufflinks 6.314       High
cufflinks 3.72       Low
cufflinks 5.711        

0 Strain