Gene : Seita.9G316900 S. italica v2.2
Defline:  (1 of 1) PTHR10772:SF13 - CHLOROPLAST CHAPERONIN 10 Genomic Order:  3169
Name:  ? Seita.9G316900 Secondary Identifier:  ? PAC:32690529
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G316900 0.5kb upstream 0.5kb upstream 3158 true scaffold_9: 36493709-36496866 Setaria italica
Seita.9G316900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 36496367-36496866 Setaria italica
Seita.9G316900 0.5kb downstream 0.5kb downstream 3158 true scaffold_9: 36493209-36496366 Setaria italica
Seita.9G316900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 36493209-36493708 Setaria italica
Seita.9G316900 1.0kb upstream 1.0kb upstream 3658 true scaffold_9: 36493709-36497366 Setaria italica
Seita.9G316900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 36496367-36497366 Setaria italica
Seita.9G316900 1.0kb downstream 1.0kb downstream 3658 true scaffold_9: 36492709-36496366 Setaria italica
Seita.9G316900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 36492709-36493708 Setaria italica
Seita.9G316900 2.0kb upstream 2.0kb upstream 4658 true scaffold_9: 36493709-36498366 Setaria italica
Seita.9G316900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 36496367-36498366 Setaria italica
Seita.9G316900 2.0kb downstream 2.0kb downstream 4658 true scaffold_9: 36491709-36496366 Setaria italica
Seita.9G316900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 36491709-36493708 Setaria italica
Seita.9G316900 5.0kb upstream 5.0kb upstream 7658 true scaffold_9: 36493709-36501366 Setaria italica
Seita.9G316900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 36496367-36501366 Setaria italica
Seita.9G316900 5.0kb downstream 5.0kb downstream 7658 true scaffold_9: 36488709-36496366 Setaria italica
Seita.9G316900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 36488709-36493708 Setaria italica
Seita.9G316900 10.0kb upstream 10.0kb upstream 12658 true scaffold_9: 36493709-36506366 Setaria italica
Seita.9G316900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 36496367-36506366 Setaria italica
Seita.9G316900 10.0kb downstream 10.0kb downstream 12658 true scaffold_9: 36483709-36496366 Setaria italica
Seita.9G316900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 36483709-36493708 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187511 5267 Panicoideae View MSA
124570892 5269 Grass View MSA
122042502 5273 Angiosperm View MSA
121347169 5274 Embryophyte View MSA
123426072 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.012        
cufflinks 5.088        
cufflinks 1.272       Low
cufflinks 0.644       Low
cufflinks 4.768        
cufflinks 5.978        
cufflinks 10.045        
cufflinks 37.15     High High
cufflinks 26.369     High High
cufflinks 19.353     High High
cufflinks 3.85        
cufflinks 2.506        
cufflinks 2.557        
cufflinks 4.492        
cufflinks 2.897        
cufflinks 6.378        
cufflinks 3.357        
cufflinks 3.17        
cufflinks 3.068        
cufflinks 3.526        

0 Strain